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Ligand clusters for UniProt code Q7SIE4

Ligand clusters for Q7SIE4: Leucine--tRNA ligase from Thermus thermophilus

Top 6 (of 20) ligand clusters
Cluster 1.
3 ligand types
3 ligands
Cluster 2.
3 ligand types
6 ligands
Cluster 3.
1 ligand type
2 ligands
Cluster 4.
1 ligand type
5 ligands
Cluster 5.
1 ligand type
2 ligands
Cluster 6.
1 ligand type
3 ligands
Representative protein: 2bteA  
JSmol
 

Structures

PDB   Schematic diagram
2bteA    
2v0gA    
2bytA    
2v0cA    
1h3nA    

 

 Cluster 1 contains 3 ligand types

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Ligand Description


 
1. Ligand: ANZ × 1
[(6-Amino-9h-Purin-9-Yl)-[5-Fluoro-1,3- Dihydro-1-Hydroxy-2,1-Benzoxaborole]-
4'Yl]methyl dihydrogen phosphate
PDB code: 2v0c(A).


 
2. Ligand: NVA-2AD × 1
NVA=Norvaline, 2AD=2'-Amino-2'-Deoxyadenosine.
PDB code: 2bte(A).


 
3. Ligand: SO4 × 1
Sulfate ion
PDB code: 1h3n(A).

 

 Cluster 2 contains 3 ligand types

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Ligand Description


 
1. Ligand: LEU × 3
PDB codes: 2bte(A), 2byt(A), 2v0g(A).


 
2. Ligand: LEU-LMS × 2
LMS=[(2r,3s,4r,5r)-5-(6-Amino-9h-Purin-9-Yl)-3,4- Dihydroxytetrahydro-2-Furanyl]methyl sulfamate.
PDB codes: 1h3n(A), 2v0c(A).


 
3. Ligand: SO4 × 1
Sulfate ion
PDB code: 2bte(A).

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: SO4 × 2
Sulfate ion
PDB codes: 1h3n(A), 2v0c(A).

 

 Cluster 4 contains 1 ligand type

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Ligand Description


 
1. Ligand: SO4 × 5
Sulfate ion
PDB codes: 1h3n(A), 2bte(A), 2byt(A), 2v0c(A), 2v0g(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description


 
1. Ligand: SO4 × 2
Sulfate ion
PDB codes: 2bte(A), 2byt(A).

 

 Cluster 6 contains 1 ligand type

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Ligand Description


 
1. Ligand: SO4 × 3
Sulfate ion
PDB codes: 2bte(A), 2byt(A), 2v0g(A).

 

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