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EBI
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Ligand clusters for UniProt code Q7SIE4
Ligand clusters for Q7SIE4: Leucine--tRNA ligase from Thermus thermophilus
Top 6 (of 20) ligand clusters
Cluster 1.
3 ligand types
3 ligands
Cluster 2.
3 ligand types
6 ligands
Cluster 3.
1 ligand type
2 ligands
Cluster 4.
1 ligand type
5 ligands
Cluster 5.
1 ligand type
2 ligands
Cluster 6.
1 ligand type
3 ligands
Representative protein: 2bteA
Structures
PDB
Schematic diagram
2bte
A
2v0g
A
2byt
A
2v0c
A
1h3n
A
Cluster 1 contains 3 ligand types
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Ligand
Description
1. Ligand:
ANZ × 1
[(6-Amino-9h-Purin-9-Yl)-[5-Fluoro-1,3- Dihydro-1-Hydroxy-2,1-Benzoxaborole]-
4'Yl]methyl dihydrogen phosphate
PDB code:
2v0c
(A).
2. Ligand:
NVA-2AD × 1
NVA
=Norvaline,
2AD
=2'-Amino-2'-Deoxyadenosine.
PDB code:
2bte
(A).
3. Ligand:
SO4 × 1
Sulfate ion
PDB code:
1h3n
(A).
Cluster 2 contains 3 ligand types
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Ligand
Description
1. Ligand:
LEU × 3
PDB codes:
2bte
(A),
2byt
(A),
2v0g
(A).
2. Ligand:
LEU-LMS × 2
LMS
=[(2r,3s,4r,5r)-5-(6-Amino-9h-Purin-9-Yl)-3,4- Dihydroxytetrahydro-2-Furanyl]methyl sulfamate.
PDB codes:
1h3n
(A),
2v0c
(A).
3. Ligand:
SO4 × 1
Sulfate ion
PDB code:
2bte
(A).
Cluster 3 contains 1 ligand type
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Ligand
Description
1. Ligand:
SO4 × 2
Sulfate ion
PDB codes:
1h3n
(A),
2v0c
(A).
Cluster 4 contains 1 ligand type
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Ligand
Description
1. Ligand:
SO4 × 5
Sulfate ion
PDB codes:
1h3n
(A),
2bte
(A),
2byt
(A),
2v0c
(A),
2v0g
(A).
Cluster 5 contains 1 ligand type
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Ligand
Description
1. Ligand:
SO4 × 2
Sulfate ion
PDB codes:
2bte
(A),
2byt
(A).
Cluster 6 contains 1 ligand type
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Ligand
Description
1. Ligand:
SO4 × 3
Sulfate ion
PDB codes:
2bte
(A),
2byt
(A),
2v0g
(A).