Ligand clusters for UniProt code Q6NYC1

Ligand clusters for Q6NYC1: Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 from Homo sapiens

		Top 6 (of 26) ligand clusters Cluster 1. 5 ligand types 9 ligands Cluster 2. 3 ligand types 3 ligands Cluster 3. 7 ligand types 11 ligands Cluster 4. 2 ligand types 5 ligands Cluster 5. 3 ligand types 4 ligands Cluster 6. 2 ligand types 4 ligands
Representative protein: 6mevA

Structures

PDB		Schematic diagram
6mevA
3k2oA
3ld8A
3ldbA
6fqcA
		more ...

Cluster 1 contains 5 ligand types

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Ligand		Description
		1. Ligand: GOL × 2 glycerin Glycerol PDB codes: 3ld8(A), 3ldb(A).
		2. Ligand: SO4 × 4 Sulfate ion PDB codes: 3ld8(A), 3ldb(A),
		3. Ligand: ALA-ALA-ALA-SER-ALA-ALA-ALA × 1 PDB code: 6fqc(A).
		4. Ligand: EPE × 1 4-(2-Hydroxyethyl)-1-Piperazine ethanesulfonic acid PDB code: 6gdy(A).
		5. Ligand: PO4 × 1 Phosphate ion PDB code: 6gdy(A).

Cluster 2 contains 3 ligand types

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Ligand		Description
		1. Ligand: ALA-ALA-ALA-ALA-ALA-ALA-ALA × 1 PDB code: 6fqc(A).
		2. Ligand: EPE × 1 4-(2-Hydroxyethyl)-1-Piperazine ethanesulfonic acid PDB code: 6gdy(A).
		3. Ligand: SO4 × 1 Sulfate ion PDB code: 3ld8(A).

Cluster 3 contains 7 ligand types

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Ligand		Description
_Fe		1. Metal: _FE × 3 PDB codes: 3ld8(A), 3ldb(A), 6gdy(A).
		2. Ligand: NMM × 1 tilarginine (2s)-2-Amino-5-[(N-Methylcarbamimidoyl)amino]pentanoic acid PDB code: 6mev(A).
_Mn		3. Metal: _MN × 1 PDB code: 6fqc(A).
		4. Ligand: AKG × 3 2-Oxoglutaric acid PDB codes: 3ldb(A), 6gdy(A), 6mev(A).
		5. Ligand: ACT × 1 Acetate ion PDB code: 3k2o(A).
		6. Ligand: OGA × 1 N-Oxalylglycine PDB code: 6fqc(A).
_Ni		7. Metal: _NI × 1 PDB code: 3k2o(A).

Cluster 4 contains 2 ligand types

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Ligand		Description
		1. Ligand: PO4 × 3 Phosphate ion PDB codes: 3k2o(A), 6fqc(A), 6gdy(A).
		2. Ligand: SO4 × 2 Sulfate ion PDB codes: 3ld8(A), 3ldb(A).

Cluster 5 contains 3 ligand types

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Ligand		Description
_Na		1. Metal: _NA × 2 PDB codes: 3k2o(A), 6fqc(A).
		2. Ligand: ACT × 1 Acetate ion PDB code: 6fqc(A).
		3. Ligand: PO4 × 1 Phosphate ion PDB code: 6gdy(A).

Cluster 6 contains 2 ligand types

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Ligand		Description
		1. Ligand: PO4 × 2 Phosphate ion PDB codes: 6fqc(A), 6gdy(A).
		2. Ligand: SO4 × 2 Sulfate ion PDB codes: 3ld8(A), 3ldb(A).