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Ligand clusters for UniProt code Q5SM19

Ligand clusters for Q5SM19: Branched-chain-amino-acid aminotransferase from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)

6 ligand clusters
Cluster 1.
6 ligand types
8 ligands
Cluster 2.
1 ligand type
1 ligand
Cluster 3.
1 ligand type
5 ligands
Cluster 4.
1 ligand type
3 ligands
Cluster 5.
1 ligand type
3 ligands
Cluster 6.
1 ligand type
1 ligand
Representative protein: 1wrvA  
JSmol
 

Structures

PDB   Schematic diagram
1wrvA    
2ej0A    
2ej2A    
2eiyA    
2ej3A    

 

 Cluster 1 contains 6 ligand types

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Ligand Description


 
1. Ligand: PLP × 3
pyridoxal phosphate
Pyridoxal-5'-Phosphate
PDB codes: 1wrv(A), 2eiy(A), 2ej3(A).


 
2. Ligand: GBN × 1
gabapentin
[1-(Aminomethyl)cyclohexyl]acetic acid
PDB code: 2ej3(A).


 
3. Ligand: 4MV × 1
4-Methyl valeric acid
PDB code: 2eiy(A).


 
4. Ligand: MPD × 1
(4s)-2-Methyl-2,4-Pentanediol
PDB code: 1wrv(A).


 
5. Ligand: PMP × 1
4'-Deoxy-4'-Aminopyridoxal-5'-Phosphate
PDB code: 2ej0(A).


 
6. Ligand: PPE × 1
4-[(1,3-Dicarboxy-Propylamino)-Methyl]-3-Hydroxy-2- Methyl-5-Phosphonooxymethyl-Pyridinium
PDB code: 2ej2(A).

 

 Cluster 2 contains 1 ligand type

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Ligand Description


 
1. Ligand: PPE × 1
4-[(1,3-Dicarboxy-Propylamino)-Methyl]-3-Hydroxy-2- Methyl-5-Phosphonooxymethyl-Pyridinium
PDB code: 2ej2(A).

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: MPD × 5
(4s)-2-Methyl-2,4-Pentanediol
PDB codes: 1wrv(A), 2eiy(A), 2ej0(A), 2ej2(A), 2ej3(A).

 

 Cluster 4 contains 1 ligand type

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Ligand Description


 
1. Ligand: MPD × 3
(4s)-2-Methyl-2,4-Pentanediol
PDB codes: 2eiy(A), 2ej0(A), 2ej3(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description


 
1. Ligand: MPD × 3
(4s)-2-Methyl-2,4-Pentanediol
PDB codes: 2eiy(A), 2ej0(A), 2ej3(A).

 

 Cluster 6 contains 1 ligand type

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Ligand Description

_Cl
 
1. Metal: _CL × 1
PDB code: 1wrv(A).

 

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