Ligand clusters for UniProt code Q5SIY4

Ligand clusters for Q5SIY4: 3-isopropylmalate dehydrogenase from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)

		Top 6 (of 11) ligand clusters Cluster 1. 10 ligand types 23 ligands Cluster 2. 5 ligand types 13 ligands Cluster 3. 3 ligand types 10 ligands Cluster 4. 1 ligand type 1 ligand Cluster 5. 1 ligand type 1 ligand Cluster 6. 1 ligand type 1 ligand
Representative protein: 2y3zA

Structures

PDB		Schematic diagram
2y3zA
2y40A
1hexA
1ipdA
2ztwA
		more ...

Cluster 1 contains 10 ligand types

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Ligand		Description
		1. Ligand: NAD × 1 Nicotinamide-Adenine-Dinucleotide PDB code: 1hex(A).
_Mn		2. Metal: _MN × 5 PDB codes: 2y40(A), 2y41(A), 2y42(A), 4f7i(A), 4wuo(A).
		3. Ligand: GOL × 4 glycerin Glycerol PDB codes: 2y3z(A), 4f7i(A), 4wuo(A).
		4. Ligand: TRS × 1 tromethamine 2-Amino-2-Hydroxymethyl-Propane-1,3-Diol PDB code: 2y3z(A).
__K		5. Metal: __K × 1 PDB code: 4f7i(A).
		6. Ligand: NAD × 4 Nicotinamide-Adenine-Dinucleotide PDB codes: 2y42(A), 2ztw(A), 4f7i(A), 4wuo(A).
		7. Ligand: IPM × 3 3-Isopropylmalic acid PDB codes: 2y41(A), 4f7i(A), 4wuo(A).
		8. Ligand: 2PE × 2 Nonaethylene glycol PDB codes: 2y3z(A),
		9. Ligand: BCN × 1 Bicine PDB code: 2y42(A).
		10. Ligand: DEI × 1 (2z)-2-Hydroxy-3-(Methylsulfanyl)prop-2-Enoic acid PDB code: 2ztw(A).

Cluster 2 contains 5 ligand types

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Ligand		Description
_Mn		1. Metal: _MN × 5 PDB codes: 2y40(A), 2y41(A), 2y42(A), 4f7i(A), 4wuo(A).
		2. Ligand: GOL × 1 glycerin Glycerol PDB code: 4f7i(A).
		3. Ligand: IPM × 3 3-Isopropylmalic acid PDB codes: 2y41(A), 4f7i(A), 4wuo(A).
		4. Ligand: BCN × 2 Bicine PDB codes: 2y42(A),
		5. Ligand: NAD × 2 Nicotinamide-Adenine-Dinucleotide PDB codes: 4f7i(A), 4wuo(A).

Cluster 3 contains 3 ligand types

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Ligand		Description
		1. Ligand: GOL × 8 glycerin Glycerol PDB codes: 4f7i(A), 4wuo(A),
		2. Ligand: 2PE × 1 Nonaethylene glycol PDB code: 2y3z(A).
		3. Ligand: MPO × 1 3[n-Morpholino]propane sulfonic acid PDB code: 4f7i(A).

Cluster 4 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 2y3z(A).

Cluster 5 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 2y3z(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 4f7i(A).