Ligand clusters for UniProt code Q5SHZ3

Ligand clusters for Q5SHZ3: D-alanine--D-alanine ligase from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)

1 ligand cluster


Cluster 1. 9 ligand types 31 ligands

Representative protein: 6u1gA

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Ligand

Description

_Mg

1. Metal: _MG × 3

PDB codes: 2zdg(C), 2zdh(A),

2. Ligand: ADP × 9

Adenosine-5'-Diphosphate

PDB codes: 2zdg(A), 2zdh(A), 6u1h(A), 6u1i(A), 6u1j(A), 6u1k(A).

3. Ligand: DAL-DAL × 7

DAL=D-Alanine.

PDB codes: 2zdq(A), 6u1d(A), 6u1e(A), 6u1f(A), 6u1g(A), 6u1j(A), 6u1k(A).

4. Ligand: ATP × 5

Adenosine-5'-Triphosphate

PDB codes: 2zdq(A), 6u1d(A), 6u1e(A), 6u1f(A), 6u1g(A).

5. Ligand: DAL × 2

D-Alanine

PDB codes: 2yzm(A), 2zdh(A).

6. Ligand: PO4 × 2

Phosphate ion

PDB codes: 6u1h(A), 6u1j(A).

7. Ligand: ANP × 1

Phosphoaminophosphonic acid-Adenylate ester

PDB code: 2yzn(A).

8. Ligand: CO3 × 1

Carbonate ion

PDB code: 6u1k(A).

9. Ligand: DS0 × 1

[(4r)-4-Azanyl-4,5-Dihydro-1,2-Oxazol-3-Yl] dihydrogen phosphate

PDB code: 6u1i(C).