Ligand clusters for UniProt code Q59961

Ligand clusters for Q59961: DNA topoisomerase 4 subunit B from Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)

		Top 6 (of 7) ligand clusters Cluster 1. 7 ligand types 12 ligands Cluster 2. 3 ligand types 3 ligands Cluster 3. 3 ligand types 5 ligands Cluster 4. 1 ligand type 2 ligands Cluster 5. 1 ligand type 13 ligands Cluster 6. 1 ligand type 2 ligands
Representative protein: 4i3hA

Structures

PDB		Schematic diagram
4i3hA
4z53A
4z4qA
4z3oA
4juoC
		more ...

Cluster 1 contains 7 ligand types

Use checkboxes to select ligands to display in RasMol, Jmol, or download as an SDF file. Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: LFX × 3 levofloxacin (3s)-9-Fluoro-3-Methyl-10-(4-Methylpiperazin-1-Yl)-7- Oxo-2,3-Dihydro-7h-[1,4]oxazino[2,3,4- Ij]quinoline-6- Carboxylic acid PDB codes: 3k9f(C), 3rae(C), 4juo(C).
		2. Ligand: TR6 × 2 trovafloxacin Trovafloxacin PDB codes: 4koe(C), 4z53(A).
		3. Ligand: MFX × 1 moxifloxacin 1-Cyclopropyl-6-Fluoro-8-Methoxy-7-[(4as,7as)- Octahydro-6h-Pyrrolo[3,4-B]pyridin-6-Yl]-4-Oxo-1,4- Dihydroquinoline-3-Carboxylic acid PDB code: 4z3o(A).
		4. Ligand: PDQ × 3 3-Amino-7-{(3r)-3-[(1s)-1-Aminoethyl]pyrrolidin-1-Yl}- 1-Cyclopropyl-6-Fluoro-8-Methylquinazoline- 2,4(1h,3h)- Dione PDB codes: 3ltn(C), 3raf(C), 4z4q(A).
		5. Ligand: 1UV × 1 (3as,4r)-4-Amino-13-Cyclopropyl-8-Fluoro-10-Oxo-3a,4,5, 6,10,13-Hexahydro-1h,3h- Pyrrolo[2',1':3,4][1, 4]oxazepino[5,6-H]quinoline-11-Carboxylic acid PDB code: 4kpf(C).
		6. Ligand: AF5 × 1 (7ar,8r)-8-Amino-4-Cyclopropyl-12-Fluoro-1-Oxo-4,7,7a, 8,9,10-Hexahydro-1h- Pyrrolo[1',2':1,7]azepino[2,3- H]quinoline-2-Carboxylic acid PDB code: 4kpe(C).
		7. Ligand: NFX × 1 7-[(3r)-3-Aminopyrrolidin-1-Yl]-8-Chloro-1-Cyclopropyl- 6-Fluoro-4-Oxo-1,4-Dihydroquinoline-3- Carboxylic acid PDB code: 3rad(C).

Cluster 2 contains 3 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: MFX × 1 moxifloxacin 1-Cyclopropyl-6-Fluoro-8-Methoxy-7-[(4as,7as)- Octahydro-6h-Pyrrolo[3,4-B]pyridin-6-Yl]-4-Oxo-1,4- Dihydroquinoline-3-Carboxylic acid PDB code: 4z3o(A).
		2. Ligand: TR6 × 1 trovafloxacin Trovafloxacin PDB code: 4z53(A).
		3. Ligand: PDQ × 1 3-Amino-7-{(3r)-3-[(1s)-1-Aminoethyl]pyrrolidin-1-Yl}- 1-Cyclopropyl-6-Fluoro-8-Methylquinazoline- 2,4(1h,3h)- Dione PDB code: 4z4q(A).

Cluster 3 contains 3 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
_Mg		1. Metal: _MG × 2 PDB codes: 5j5p(A), 5j5q(A).
		2. Ligand: ANP × 2 Phosphoaminophosphonic acid-Adenylate ester PDB codes: 5j5p(A), 5j5q(A).
_Na		3. Metal: _NA × 1 PDB code: 5j5p(A).

Cluster 4 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: ANP × 2 Phosphoaminophosphonic acid-Adenylate ester PDB codes: 5j5p(A), 5j5q(A).

Cluster 5 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand		Description
_Mg		1. Metal: _MG × 13 PDB codes: 3k9f(C), 3ksa(C), 3ksb(C), 3ltn(C), 3rad(C), 3rae(C), 3raf(C), 4juo(C), 4koe(C), 4kpf(C), 4z3o(A), 4z4q(A), 4z53(A).

Cluster 6 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand		Description
_Mg		1. Metal: _MG × 2 PDB codes: 4i3h(A), 4z4q(A).