Ligand clusters for UniProt code Q47155

Ligand clusters for Q47155: DNA polymerase IV from Escherichia coli (strain K12)

		2 ligand clusters Cluster 1. 13 ligand types 89 ligands Cluster 2. 1 ligand type 1 ligand
Representative protein: 4ir1F

Structures

PDB		Schematic diagram
4ir1F
4r8uA
4q43A
5zlvF
5yv3F
		more ...

Cluster 1 contains 13 ligand types

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Ligand		Description
_Mg		1. Metal: _MG × 48 PDB codes: 4ir1(F), 4ir9(F), 4irc(F), 4ird(F), 4irk(B), 4q43(A), 4q44(A), 4q45(F), 4r8u(A), 5yus(F), 5yut(F), 5yuu(F), 5yuv(F), 5yuw(A), 5yux(F), 5yuy(F), 5yuz(F), 5yv0(F), 5yv1(F), 5yv2(F), 5yv3(F), 5yv4(F), 5yye(F), 5zlv(F), 6ig1(F),
_Mn		2. Metal: _MN × 2 PDB codes: 6juq(F),
		3. Ligand: TTP × 11 Thymidine-5'-Triphosphate PDB codes: 5yur(F), 5yus(F), 5yut(F), 5yuu(F), 5yuv(F), 5yuw(A), 5yux(F), 5yuy(F), 5yv3(F), 6ig1(F).
		4. Ligand: PO4 × 7 Phosphate ion PDB codes: 5yv0(F), 5yv1(F), 5yv2(F), 5zlv(F),
		5. Ligand: DPO × 6 Diphosphate PDB codes: 5yux(F), 5yuy(F), 5yuz(F), 5yv3(F), 5yv4(F), 6ig1(F).
		6. Ligand: 1FZ × 4 5'-O-[(R)-Hydroxy{[(r)-Hydroxy(phosphonooxy) phosphoryl]amino}phosphoryl]thymidine PDB codes: 4ir1(F), 4q44(A), 4q45(F), 4r8u(A).
		7. Ligand: 0KX × 3 2'-Deoxy-5'-O-[(R)-Hydroxy{[(r)-Hydroxy(phosphonooxy) phosphoryl]amino}phosphoryl]cytidine PDB codes: 4irc(F), 4q43(A), 6jup(F).
		8. Ligand: TTW × 2 5'-O-[Hydroxy{[hydroxy(phosphonoamino) phosphoryl]oxy}phosphoryl]thymidine PDB codes: 5yyd(F), 5yye(F).
_Na		9. Metal: _NA × 2 PDB codes: 5yur(F), 5yyd(F).
		10. Ligand: 2TM × 1 5'-O-[(S)-Hydroxy{[(s)-Hydroxy(phosphonooxy) phosphoryl]methyl}phosphoryl]cytidine PDB code: 6juq(F).
		11. Ligand: DCP × 1 2'-Deoxycytidine-5'-Triphosphate PDB code: 4irk(B).
		12. Ligand: DZ4 × 1 2'-Deoxy-5'-O-[(R)-Hydroxy{[(r)-Hydroxy(phosphonooxy) phosphoryl]amino}phosphoryl]adenosine PDB code: 4ird(F).
		13. Ligand: XG4 × 1 2'-Deoxy-5'-O-[(R)-Hydroxy{[(r)-Hydroxy(phosphonooxy) phosphoryl]amino}phosphoryl]guanosine PDB code: 4ir9(F).

Cluster 2 contains 1 ligand type

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Ligand		Description
		1. Ligand: SO4 × 1 Sulfate ion PDB code: 1unn(C).