Ligand clusters for UniProt code Q2XVP4

Ligand clusters for Q2XVP4: Tubulin alpha-1B chain from Sus scrofa

		Top 6 (of 15) ligand clusters Cluster 1. 34 ligand types 152 ligands Cluster 2. 4 ligand types 12 ligands Cluster 3. 1 ligand type 1 ligand Cluster 4. 1 ligand type 1 ligand Cluster 5. 2 ligand types 18 ligands Cluster 6. 1 ligand type 4 ligands
Representative protein: 7dafA

Structures

PDB		Schematic diagram
7dafA
6wweA
6wwvA
6wwgA
6evyE
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Cluster 1 contains 34 ligand types (of which only 20 are listed. Click for all)

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Ligand		Description
_Mg		1. Metal: _MG × 22 PDB codes: 3jak(E), 3jal(E), 3jar(E), 3jas(E), 3jaw(A), 5syc(A), 5sye(A), 5syf(A), 5syg(A), 5yl2(A), 6brf(A), 6dpv(A), 6dpw(A), 6evw(E), 6evx(A), 6evy(E), 6evz(A), 6o2q(A), 6o2r(A), 6o5n(A), 6rza(A), 6rzb(A).
		2. Ligand: LOC × 1 colchicine N-[(7s)-1,2,3,10-Tetramethoxy-9-Oxo-6,7-Dihydro-5h- Benzo[d]heptalen-7-Yl]ethanamide PDB code: 5xiw(A).
		3. Ligand: GTP × 97 Guanosine-5'-Triphosphate PDB codes: 3j8x(A), 3j8y(A), 3jak(E), 3jal(E), 3jar(E), 3jas(E), 3jat(E), 3jaw(A), 4zhq(A), 4zi7(A), 4zol(A), 5ca0(A), 5ezy(A), 5fnv(A), 5h74(A), 5h7o(A), 5jcb(A), 5jqg(A), 5kmg(A), 5syc(A), 5sye(A), 5syf(A), 5syg(A), 5xiw(A), 5xke(A), 5xkf(A), 5xkg(A), 5xkh(A), 5xp3(A), 5yl2(A), 5ylj(A), 5yls(A), 5z4u(A), 5zxh(A), 6agk(A), 6b0c(A), 6b0i(A), 6b0l(A), 6bjc(A), 6br1(A), 6brf(A), 6bry(A), 6bs2(A), 6cvj(A), 6cvn(B), 6d88(A), 6dpu(A), 6dpv(A), 6dpw(A), 6eg5(A), 6evw(E), 6evx(A), 6evy(E), 6evz(A), 6ew0(E), 6jcj(A), 6kpp(A), 6ls4(A), 6lsm(A), 6lsn(A), 6n47(A), 6nng(A), 6o2q(A), 6o2r(A), 6o5m(A), 6o5n(A), 6o61(A), 6pc4(A), 6rza(A), 6rzb(A), 6ta4(A), 6wwe(A), 6wwf(A), 6wwg(A), 6wwh(A), 6wwi(A), 6wwj(A), 6wwk(A), 6wwl(A), 6wwm(A), 6wwn(A), 6wwo(A), 6wwp(A), 6wwq(A), 6wwr(A), 6wws(A), 6wwt(A), 6wwu(A), 6wwv(A), 6y4m(A), 6y4n(A), 6zpi(A), 7dad(A), 7dae(A), 7daf(A), 7lvq(A), 7lvr(A).
		4. Ligand: G2P × 2 Phosphomethylphosphonic acid guanylate ester PDB codes: 6ta3(A), 6tiw(A).
		5. Ligand: 7Q7 × 1 2-(1h-Indol-4-Yl)-4-(3,4,5-Trimethoxyphenyl)-1h- Imidazo[4,5-C]pyridine PDB code: 5h7o(A).
		6. Ligand: 88U × 1 N-(4-Methoxyphenyl)-N,2-Dimethyl-Quinazolin-4-Amine PDB code: 5xkf(A).
		7. Ligand: 890 × 1 4-[(3-Azanyl-4-Methoxy-Phenyl)-Methyl-Amino]chromen-2- One PDB code: 5xkg(A).
		8. Ligand: 89C × 1 4-[(4-Methoxy-3-Oxidanyl-Phenyl)-Methyl-Amino]chromen- 2-One PDB code: 5xkh(A).
		9. Ligand: 8WU × 1 (E)-1-(5-Methoxy-2,2-Dimethyl-Chromen-8-Yl)-3-(4- Methoxy-3-Oxidanyl-Phenyl)prop-2-En-1-One PDB code: 5yl2(A).
		10. Ligand: 8X0 × 1 (E)-1-(5-Methoxy-2,2-Dimethyl-Chromen-8-Yl)-3-(4- Methoxyphenyl)prop-2-En-1-One PDB code: 5ylj(A).
		11. Ligand: 96C × 1 4-(4-Ethoxyphenyl)-1-Methyl-3-(3,4,5-Trimethoxyphenyl)- 1h-Pyrazole PDB code: 5z4u(A).
		12. Ligand: 9LX × 1 2-(6-Fluoro-3-{[(4-Methoxyphenyl) methyl]amino}imidazo[1,2-A]pyridin-2-Yl)phenol PDB code: 5zxh(A).
		13. Ligand: 9WR × 1 [6-(3-Hydroxy-4-Methylphenyl)pyridin-2-Yl](3,4,5- Trimethoxyphenyl)methanone PDB code: 6agk(A).
		14. Ligand: BG0 × 1 (4r)-2,7,8-Triamino-4-(3-Bromo-4,5-Dimethoxyphenyl)-4h- 1-Benzopyran-3-Carbonitrile PDB code: 6jcj(A).
		15. Ligand: DJ9 × 1 2-(1h-Indol-6-Yl)-4-(3,4,5-Trimethoxyphenyl)-1h- Imidazo[4,5-C]pyridine PDB code: 6nng(A).
		16. Ligand: DO6 × 1 (6-Methoxy-2-Methyl-7-Oxidanyl-1-Benzofuran-3-Yl)-(3,4, 5-Trimethoxyphenyl)methanone PDB code: 6kpp(A).
		17. Ligand: E3Y × 1 2-Chloro-4-(6-Methoxy-3,4-Dihydroquinolin-1(2h)-Yl) pyrido[2,3-D]pyrimidine PDB code: 6br1(A).
		18. Ligand: E44 × 1 2-Chloro-4-(6-Methoxy-3,4-Dihydroquinolin-1(2h)-Yl) pyrido[3,2-D]pyrimidine PDB code: 6brf(A).
		19. Ligand: E9Y × 1 1-(3,6-Dimethyl[1,2]oxazolo[5,4-D]pyrimidin-4-Yl)-6- Methoxy-1,2,3,4-Tetrahydroquinoline PDB code: 6bs2(A).
		20. Ligand: ERR × 1 2-(1-Methylindol-5-Yl)-7-(3,4,5-Trimethoxyphenyl) pyrazolo[1,5-A]pyrimidine PDB code: 6lsn(A).
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Cluster 2 contains 4 ligand types

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Ligand		Description
		1. Ligand: GDP × 6 Guanosine-5'-Diphosphate PDB codes: 6cvj(A), 6cvn(B), 6evx(A), 6evz(A), 6ew0(E), 6o2q(A).
		2. Ligand: GSP × 3 5'-Guanosine-Diphosphate-Monothiophosphate PDB codes: 3jak(E), 6dpw(A), 6evy(E).
		3. Ligand: G2P × 2 Phosphomethylphosphonic acid guanylate ester PDB codes: 3jat(E), 6evw(E).
		4. Ligand: PO4 × 1 Phosphate ion PDB code: 6evx(A).

Cluster 3 contains 1 ligand type

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Ligand		Description
		1. Ligand: ACP × 1 Phosphomethylphosphonic acid adenylate ester PDB code: 7daf(A).

Cluster 4 contains 1 ligand type

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Ligand		Description
		1. Ligand: MZK × 1 6-[4-(Trifluoromethyl)phenyl]-3,4-Dihydro-1~{h}- Quinolin-2-One PDB code: 6ta3(A).

Cluster 5 contains 2 ligand types

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 4zi7(A).
		2. Ligand: MES × 17 2-(N-Morpholino)-Ethanesulfonic acid PDB codes: 5ca0(A), 5fnv(A), 5h7o(A), 5jcb(A), 5jqg(A), 5xke(A), 6br1(A), 6brf(A), 6eg5(A), 6ls4(A), 6n47(A), 6o5m(A), 6o5n(A), 6pc4(A), 7dad(A), 7dae(A), 7daf(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 4 glycerin Glycerol PDB codes: 4zhq(A), 4zi7(A), 4zol(A), 5jcb(A).