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Ligand clusters for UniProt code Q0PB90

Ligand clusters for Q0PB90: Putative periplasmic protein from Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168)

6 ligand clusters
Cluster 1.
4 ligand types
4 ligands
Cluster 2.
4 ligand types
5 ligands
Cluster 3.
2 ligand types
15 ligands
Cluster 4.
3 ligand types
3 ligands
Cluster 5.
1 ligand type
15 ligands
Cluster 6.
1 ligand type
15 ligands
Representative protein: 5w17A  
JSmol
 

Structures

PDB   Schematic diagram
5w17A    
5w3cA    
5w3aA    
5w2zA    
5w2xA    
 more ...

 

 Cluster 1 contains 4 ligand types

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Ligand Description


 
1. Ligand: 9UM × 1
3-(Bromomethyl)-2,5,6-Trimethyl-1h,7h-Pyrazolo[1,2- A]pyrazole-1,7-Dione
PDB code: 5w30(A).


 
2. Ligand: MBO × 1
Mercuribenzoic acid
PDB code: 5w31(A).


 
3. Ligand: MNB × 1
5-Mercapto-2-Nitro-Benzoic acid
PDB code: 5w2z(A).


 
4. Ligand: SEC × 1
Selenocysteine
PDB code: 5w32(A).

 

 Cluster 2 contains 4 ligand types

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Ligand Description


 
1. Ligand: MBO × 2
Mercuribenzoic acid
PDB codes: 5w3b(A),


 
2. Ligand: 9UM × 1
3-(Bromomethyl)-2,5,6-Trimethyl-1h,7h-Pyrazolo[1,2- A]pyrazole-1,7-Dione
PDB code: 5w39(A).


 
3. Ligand: MNB × 1
5-Mercapto-2-Nitro-Benzoic acid
PDB code: 5w3a(A).


 
4. Ligand: SEC × 1
Selenocysteine
PDB code: 5w3c(A).

 

 Cluster 3 contains 2 ligand types

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Ligand Description


 
1. Ligand: UNL × 9
Unknown ligand
PDB codes: 5w2d(A), 5w2k(A), 5w2r(A), 5w2v(A), 5w2x(A), 5w2z(A), 5w30(A), 5w31(A), 5w32(A).


 
2. Ligand: LFA × 6
Eicosane
PDB codes: 5w17(A), 5w37(A), 5w39(A), 5w3a(A), 5w3b(A), 5w3c(A).

 

 Cluster 4 contains 3 ligand types

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Ligand Description

Mbo
 
1. Metal: MBO × 1
PDB code: 5w2k(A).


 
2. Ligand: MNB × 1
5-Mercapto-2-Nitro-Benzoic acid
PDB code: 5w2r(A).

Sec
 
3. Metal: SEC × 1
PDB code: 5w2v(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description


 
1. Ligand: SO4 × 15
Sulfate ion
PDB codes: 5w17(A), 5w2d(A), 5w2k(A), 5w2r(A), 5w2v(A), 5w2x(A), 5w2z(A), 5w30(A), 5w31(A), 5w32(A), 5w37(A), 5w39(A), 5w3a(A), 5w3b(A), 5w3c(A).

 

 Cluster 6 contains 1 ligand type

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Ligand Description


 
1. Ligand: SO4 × 15
Sulfate ion
PDB codes: 5w17(A), 5w2d(A), 5w2k(A), 5w2r(A), 5w2v(A), 5w2x(A), 5w2z(A), 5w30(A), 5w31(A), 5w32(A), 5w37(A), 5w39(A), 5w3a(A), 5w3b(A), 5w3c(A).

 

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