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Ligand clusters for UniProt code Q0PB90
Ligand clusters for Q0PB90: Putative periplasmic protein from Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168)
6 ligand clusters
Cluster 1.
4 ligand types
4 ligands
Cluster 2.
4 ligand types
5 ligands
Cluster 3.
2 ligand types
15 ligands
Cluster 4.
3 ligand types
3 ligands
Cluster 5.
1 ligand type
15 ligands
Cluster 6.
1 ligand type
15 ligands
Representative protein: 5w17A
Structures
PDB
Schematic diagram
5w17
A
5w3c
A
5w3a
A
5w2z
A
5w2x
A
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Cluster 1 contains 4 ligand types
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Ligand
Description
1. Ligand:
9UM × 1
3-(Bromomethyl)-2,5,6-Trimethyl-1h,7h-Pyrazolo[1,2- A]pyrazole-1,7-Dione
PDB code:
5w30
(A).
2. Ligand:
MBO × 1
Mercuribenzoic acid
PDB code:
5w31
(A).
3. Ligand:
MNB × 1
5-Mercapto-2-Nitro-Benzoic acid
PDB code:
5w2z
(A).
4. Ligand:
SEC × 1
Selenocysteine
PDB code:
5w32
(A).
Cluster 2 contains 4 ligand types
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Ligand
Description
1. Ligand:
MBO × 2
Mercuribenzoic acid
PDB codes:
5w3b
(A),
2. Ligand:
9UM × 1
3-(Bromomethyl)-2,5,6-Trimethyl-1h,7h-Pyrazolo[1,2- A]pyrazole-1,7-Dione
PDB code:
5w39
(A).
3. Ligand:
MNB × 1
5-Mercapto-2-Nitro-Benzoic acid
PDB code:
5w3a
(A).
4. Ligand:
SEC × 1
Selenocysteine
PDB code:
5w3c
(A).
Cluster 3 contains 2 ligand types
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Ligand
Description
1. Ligand:
UNL × 9
Unknown ligand
PDB codes:
5w2d
(A),
5w2k
(A),
5w2r
(A),
5w2v
(A),
5w2x
(A),
5w2z
(A),
5w30
(A),
5w31
(A),
5w32
(A).
2. Ligand:
LFA × 6
Eicosane
PDB codes:
5w17
(A),
5w37
(A),
5w39
(A),
5w3a
(A),
5w3b
(A),
5w3c
(A).
Cluster 4 contains 3 ligand types
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Ligand
Description
Mbo
1. Metal:
MBO × 1
PDB code:
5w2k
(A).
2. Ligand:
MNB × 1
5-Mercapto-2-Nitro-Benzoic acid
PDB code:
5w2r
(A).
Sec
3. Metal:
SEC × 1
PDB code:
5w2v
(A).
Cluster 5 contains 1 ligand type
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Ligand
Description
1. Ligand:
SO4 × 15
Sulfate ion
PDB codes:
5w17
(A),
5w2d
(A),
5w2k
(A),
5w2r
(A),
5w2v
(A),
5w2x
(A),
5w2z
(A),
5w30
(A),
5w31
(A),
5w32
(A),
5w37
(A),
5w39
(A),
5w3a
(A),
5w3b
(A),
5w3c
(A).
Cluster 6 contains 1 ligand type
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Ligand
Description
1. Ligand:
SO4 × 15
Sulfate ion
PDB codes:
5w17
(A),
5w2d
(A),
5w2k
(A),
5w2r
(A),
5w2v
(A),
5w2x
(A),
5w2z
(A),
5w30
(A),
5w31
(A),
5w32
(A),
5w37
(A),
5w39
(A),
5w3a
(A),
5w3b
(A),
5w3c
(A).