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Ligand clusters for UniProt code P94692

Ligand clusters for P94692: Pyruvate:ferredoxin oxidoreductase from Desulfocurvibacter africanus

Top 6 (of 7) ligand clusters
Cluster 1.
7 ligand types
24 ligands
Cluster 2.
2 ligand types
5 ligands
Cluster 3.
1 ligand type
10 ligands
Cluster 4.
1 ligand type
10 ligands
Cluster 5.
1 ligand type
10 ligands
Cluster 6.
1 ligand type
9 ligands
Representative protein: 1b0pA  
JSmol
 

Structures

PDB   Schematic diagram
1b0pA    
1kekA    
2c3pA    
2pdaA    
2c3uA    
 more ...

 

 Cluster 1 contains 7 ligand types

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Ligand Description

_Mg
 
1. Metal: _MG × 9
PDB codes: 1kek(A), 2c3m(A), 2c3o(A), 2c3p(A), 2c3u(A), 2c3y(A), 2c42(A), 2pda(A), 2uza(A).


 
2. Ligand: PYR × 4
pyruvic acid
Pyruvic acid
PDB codes: 2c3o(A), 2c3u(A), 2c42(A), 2pda(A).


 
3. Ligand: TPP × 5
Thiamine diphosphate
PDB codes: 1b0p(A), 2c3m(A), 2c3o(A), 2c42(A), 2pda(A).


 
4. Ligand: HTL × 3
2-Acetyl-Thiamine diphosphate
PDB codes: 1kek(A), 2c3y(A), 2uza(A).


 
5. Ligand: 1TP × 1
1-(2-{(2s,4r,5r)-3-[(4-Amino-2- Methylpyrimidin-5-Yl)methyl]-2-[(1s)-1-Carboxy-1- Hydroxyethyl]-4-
Methyl-1,3-Thiazolidin-5-Yl}ethoxy)-1, 1,3,3-Tetrahydroxy-1lambda~5~-Diphosphox-1-En- 2-Ium 3-
Oxide
PDB code: 2c3p(A).


 
6. Ligand: 2TP × 1
2-(3-{[4-(Hydroxyamino)-2-Methylpyrimidin-5- Yl]methyl}-4-Methyl-2,3-Dihydro-1,3-Thiazol-5-
Yl)ethyl trihydrogen diphosphate
PDB code: 2c3u(A).

_Cl
 
7. Metal: _CL × 1
PDB code: 2c3m(A).

 

 Cluster 2 contains 2 ligand types

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Ligand Description


 
1. Ligand: PYR × 4
pyruvic acid
Pyruvic acid
PDB codes: 2c3o(A), 2c3u(A), 2c42(A), 2pda(A).


 
2. Ligand: 1TP × 1
1-(2-{(2s,4r,5r)-3-[(4-Amino-2- Methylpyrimidin-5-Yl)methyl]-2-[(1s)-1-Carboxy-1- Hydroxyethyl]-4-
Methyl-1,3-Thiazolidin-5-Yl}ethoxy)-1, 1,3,3-Tetrahydroxy-1lambda~5~-Diphosphox-1-En- 2-Ium 3-
Oxide
PDB code: 2c3p(A).

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: SF4 × 10
Iron/sulfur cluster
PDB codes: 1b0p(A), 1kek(A), 2c3m(A), 2c3o(A), 2c3p(A), 2c3u(A), 2c3y(A), 2c42(A), 2pda(A), 2uza(A).

 

 Cluster 4 contains 1 ligand type

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Ligand Description


 
1. Ligand: SF4 × 10
Iron/sulfur cluster
PDB codes: 1b0p(A), 1kek(A), 2c3m(A), 2c3o(A), 2c3p(A), 2c3u(A), 2c3y(A), 2c42(A), 2pda(A), 2uza(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description


 
1. Ligand: SF4 × 10
Iron/sulfur cluster
PDB codes: 1b0p(A), 1kek(A), 2c3m(A), 2c3o(A), 2c3p(A), 2c3u(A), 2c3y(A), 2c42(A), 2pda(A), 2uza(A).

 

 Cluster 6 contains 1 ligand type

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Ligand Description


 
1. Ligand: SF4 × 9
Iron/sulfur cluster
PDB codes: 1b0p(A), 1kek(A), 2c3m(A), 2c3p(A), 2c3u(A), 2c3y(A), 2c42(A), 2pda(A), 2uza(A).

 

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