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Ligand clusters for UniProt code P94692
Ligand clusters for P94692: Pyruvate:ferredoxin oxidoreductase from Desulfocurvibacter africanus
Top 6 (of 7) ligand clusters
Cluster 1.
7 ligand types
24 ligands
Cluster 2.
2 ligand types
5 ligands
Cluster 3.
1 ligand type
10 ligands
Cluster 4.
1 ligand type
10 ligands
Cluster 5.
1 ligand type
10 ligands
Cluster 6.
1 ligand type
9 ligands
Representative protein: 1b0pA
Structures
PDB
Schematic diagram
1b0p
A
1kek
A
2c3p
A
2pda
A
2c3u
A
more ...
Cluster 1 contains 7 ligand types
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Ligand
Description
_Mg
1. Metal:
_MG × 9
PDB codes:
1kek
(A),
2c3m
(A),
2c3o
(A),
2c3p
(A),
2c3u
(A),
2c3y
(A),
2c42
(A),
2pda
(A),
2uza
(A).
2. Ligand:
PYR × 4
pyruvic acid
Pyruvic acid
PDB codes:
2c3o
(A),
2c3u
(A),
2c42
(A),
2pda
(A).
3. Ligand:
TPP × 5
Thiamine diphosphate
PDB codes:
1b0p
(A),
2c3m
(A),
2c3o
(A),
2c42
(A),
2pda
(A).
4. Ligand:
HTL × 3
2-Acetyl-Thiamine diphosphate
PDB codes:
1kek
(A),
2c3y
(A),
2uza
(A).
5. Ligand:
1TP × 1
1-(2-{(2s,4r,5r)-3-[(4-Amino-2- Methylpyrimidin-5-Yl)methyl]-2-[(1s)-1-Carboxy-1- Hydroxyethyl]-4-
Methyl-1,3-Thiazolidin-5-Yl}ethoxy)-1, 1,3,3-Tetrahydroxy-1lambda~5~-Diphosphox-1-En- 2-Ium 3-
Oxide
PDB code:
2c3p
(A).
6. Ligand:
2TP × 1
2-(3-{[4-(Hydroxyamino)-2-Methylpyrimidin-5- Yl]methyl}-4-Methyl-2,3-Dihydro-1,3-Thiazol-5-
Yl)ethyl trihydrogen diphosphate
PDB code:
2c3u
(A).
_Cl
7. Metal:
_CL × 1
PDB code:
2c3m
(A).
Cluster 2 contains 2 ligand types
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Ligand
Description
1. Ligand:
PYR × 4
pyruvic acid
Pyruvic acid
PDB codes:
2c3o
(A),
2c3u
(A),
2c42
(A),
2pda
(A).
2. Ligand:
1TP × 1
1-(2-{(2s,4r,5r)-3-[(4-Amino-2- Methylpyrimidin-5-Yl)methyl]-2-[(1s)-1-Carboxy-1- Hydroxyethyl]-4-
Methyl-1,3-Thiazolidin-5-Yl}ethoxy)-1, 1,3,3-Tetrahydroxy-1lambda~5~-Diphosphox-1-En- 2-Ium 3-
Oxide
PDB code:
2c3p
(A).
Cluster 3 contains 1 ligand type
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Ligand
Description
1. Ligand:
SF4 × 10
Iron/sulfur cluster
PDB codes:
1b0p
(A),
1kek
(A),
2c3m
(A),
2c3o
(A),
2c3p
(A),
2c3u
(A),
2c3y
(A),
2c42
(A),
2pda
(A),
2uza
(A).
Cluster 4 contains 1 ligand type
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Ligand
Description
1. Ligand:
SF4 × 10
Iron/sulfur cluster
PDB codes:
1b0p
(A),
1kek
(A),
2c3m
(A),
2c3o
(A),
2c3p
(A),
2c3u
(A),
2c3y
(A),
2c42
(A),
2pda
(A),
2uza
(A).
Cluster 5 contains 1 ligand type
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Ligand
Description
1. Ligand:
SF4 × 10
Iron/sulfur cluster
PDB codes:
1b0p
(A),
1kek
(A),
2c3m
(A),
2c3o
(A),
2c3p
(A),
2c3u
(A),
2c3y
(A),
2c42
(A),
2pda
(A),
2uza
(A).
Cluster 6 contains 1 ligand type
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Ligand
Description
1. Ligand:
SF4 × 9
Iron/sulfur cluster
PDB codes:
1b0p
(A),
1kek
(A),
2c3m
(A),
2c3p
(A),
2c3u
(A),
2c3y
(A),
2c42
(A),
2pda
(A),
2uza
(A).