Ligand clusters for UniProt code P53582

Ligand clusters for P53582: Methionine aminopeptidase 1 from Homo sapiens

		Top 6 (of 8) ligand clusters Cluster 1. 31 ligand types 126 ligands Cluster 2. 2 ligand types 3 ligands Cluster 3. 1 ligand type 19 ligands Cluster 4. 2 ligand types 3 ligands Cluster 5. 1 ligand type 2 ligands Cluster 6. 1 ligand type 1 ligand
Representative protein: 2b3lA

Structures

PDB		Schematic diagram
2b3lA
2b3hA
4u70A
4fliA
6lzcA
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Cluster 1 contains 31 ligand types (of which only 20 are listed. Click for all)

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Ligand		Description
_Mn		1. Metal: _MN × 8 PDB codes: 4fli(A), 4flj(A), 4flk(A), 4fll(A),
		2. Ligand: GOL × 6 glycerin Glycerol PDB codes: 2b3h(A), 2b3l(A), 2gz5(A), 4u76(A), 6lzb(A), 6lzc(A).
		3. Ligand: MET × 3 methionine PDB codes: 4u6j(A), 4u75(A), 5yr7(A).
		4. Ligand: ACY × 1 acetic acid Acetic acid PDB code: 2b3l(A).
_Co		5. Metal: _CO × 76 PDB codes: 2b3h(A), 2b3k(A), 2g6p(A), 2gz5(A), 2nq6(A), 2nq7(A), 4hxx(A), 4ikr(A), 4iks(A), 4ikt(A), 4iku(A), 4iu6(A), 4u1b(A), 4u69(A), 4u6c(A), 4u6e(A), 4u6j(A), 4u6w(A), 4u6z(A), 4u70(A), 4u71(A), 4u73(A), 4u75(A), 4u76(A), 5ykp(A), 5yr4(A), 5yr5(A), 5yr6(A), 5yr7(A), 6lzb(A), 6lzc(A).
		6. Ligand: OVA × 3 3,4-Dihydroxy-2-Methoxy-4-Methyl-3-[2-Methyl-3-(3- Methyl-But-2-Enyl) -Oxiranyl]-Cyclohexanone PDB codes: 2gz5(A), 5ykp(A), 5yr5(A).
		7. Ligand: Q02 × 2 [(R)-Amino(phenyl)methyl]phosphonic acid PDB codes: 4u6e(A), 4u73(A).
		8. Ligand: Q07 × 2 [(1r,2s)-1-Amino-2-Methylpentyl]phosphonic acid PDB codes: 4u69(A), 4u6z(A).
		9. Ligand: Q08 × 2 [(1r)-1-Amino-2-Propylpentyl]phosphonic acid PDB codes: 4u1b(A), 4u6w(A).
		10. Ligand: TN4 × 2 (1r,2s,3s,4r)-4-Hydroxy-2-Methoxy-4-Methyl-3-[(2r,3r)- 2-Methyl-3-(3-Methylbut-2-En-1-Yl)oxiran-2- Yl]cyclohexyl (chloroacetyl)carbamate PDB codes: 5yr4(A), 5yr6(A).
		11. Ligand: 1AY × 1 (1r)-N~2~-[5-Chloro-2-(5-Chloropyridin-2-Yl)-6- Methylpyrimidin-4-Yl]-1-Phenyl-N~1~-(4- Phenylbutyl) ethane-1,2-Diamine PDB code: 4hxx(A).
		12. Ligand: ACT × 1 Acetate ion PDB code: 2b3k(A).
		13. Ligand: EPE × 1 4-(2-Hydroxyethyl)-1-Piperazine ethanesulfonic acid PDB code: 2g6p(A).
		14. Ligand: EYF × 1 1-[(3-Methoxyphenyl)methyl]-~{N}-Oxidanyl-Pyrrolo[2,3- B]pyridine-5-Carboxamide PDB code: 6lzb(A).
		15. Ligand: EYL × 1 ~{N}-Oxidanyl-1-(Phenylmethyl)pyrrolo[2,3-B]pyridine-4- Carboxamide PDB code: 6lzc(A).
		16. Ligand: FZ1 × 1 4-[4-(4-Methoxyphenyl)piperazin-1-Yl]-2-(Pyridin-2-Yl) quinazoline PDB code: 4iu6(A).
		17. Ligand: HM2 × 1 5-Chloro-6-Methyl-N-(2-Phenylethyl)-2-Pyridin-2- Ylpyrimidin-4-Amine PDB code: 2g6p(A).
		18. Ligand: HM4 × 1 Tert-Butyl {2-[(1,3-Thiazol-2-Ylamino)carbonyl]pyridin- 3-Yl}carbamate PDB code: 2nq6(A).
		19. Ligand: HM5 × 1 3-[(2,2-Dimethylpropanoyl)amino]-N-1,3-Thiazol-2- Ylpyridine-2-Carboxamide PDB code: 2nq7(A).
		20. Ligand: PVP × 1 2-{4-[5-Chloro-6-Methyl-2-(Pyridin-2-Yl)pyrimidin-4- Yl]piperazin-1-Yl}ethanol PDB code: 4ikr(A).
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Cluster 2 contains 2 ligand types

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 6lzb(A).
		2. Ligand: SO4 × 2 Sulfate ion PDB codes: 4hxx(A), 4iu6(A).

Cluster 3 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 19 glycerin Glycerol PDB codes: 2b3h(A), 2b3k(A), 2b3l(A), 2g6p(A), 2gz5(A), 2nq6(A), 2nq7(A), 4ikr(A), 4iks(A), 4ikt(A), 4u1b(A), 4u6c(A), 4u6j(A), 4u6w(A), 4u6z(A), 4u71(A), 4u75(A), 4u76(A), 5yr4(A).

Cluster 4 contains 2 ligand types

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Ligand		Description
		1. Ligand: SO4 × 2 Sulfate ion PDB codes: 4hxx(A), 4iu6(A).
_Co		2. Metal: _CO × 1 PDB code: 5yr7(A).

Cluster 5 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 2 glycerin Glycerol PDB codes: 6lzb(A), 6lzc(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 6lzc(A).