Ligand clusters for UniProt code P51765

Ligand clusters for P51765: Photosystem II protein D1 from Thermosynechococcus vulcanus

		Top 6 (of 14) ligand clusters Cluster 1. 17 ligand types 750 ligands Cluster 2. 5 ligand types 31 ligands Cluster 3. 2 ligand types 13 ligands Cluster 4. 2 ligand types 20 ligands Cluster 5. 1 ligand type 11 ligands Cluster 6. 1 ligand type 11 ligands
Representative protein: 3a0bA

Structures

PDB		Schematic diagram
3a0bA
6jlpA
6jloA
6jllA
7czlA
		more ...

Cluster 1 contains 17 ligand types

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Ligand		Description
		1. Ligand: BCR × 48 beta carotene Beta-Carotene PDB codes: 3a0b(A), 3a0h(A), 3wu2(A), 4il6(A), 4ub6(A), 4ub8(A), 5b5e(A), 5b66(A), 5gth(A), 5gti(A), 5v2c(A), 5ws5(A), 5ws6(A), 6jlj(A), 6jlk(A), 6jll(A), 6jlm(A), 6jln(A), 6jlo(A), 6jlp(A), 7cji(A), 7cjj(A), 7cou(A), 7czl(A), 7d1t(A), 7d1u(A),
		2. Ligand: GOL × 19 glycerin Glycerol PDB codes: 3wu2(A), 4ub6(A), 4ub8(A), 5gth(A), 5gti(A), 5v2c(A), 5ws5(A), 5ws6(A), 6jlj(A), 6jlk(A), 6jll(A), 6jlm(A), 6jln(A), 6jlo(A), 6jlp(A), 7cji(A), 7cjj(A), 7cou(A).
		3. Ligand: DMS × 6 dimethyl sulfoxide Dimethyl sulfoxide PDB codes: 4il6(A), 5b5e(A), 5b66(A),
		4. Ligand: CLA × 165 Chlorophyll a PDB codes: 1izl(A), 3a0b(A), 3a0h(A), 3wu2(A), 4il6(A), 4ub6(A), 4ub8(A), 5b5e(A), 5b66(A), 5gth(A), 5gti(A), 5v2c(A), 5ws5(A), 5ws6(A), 6jlj(A), 6jlk(A), 6jll(A), 6jlm(A), 6jln(A), 6jlo(A), 6jlp(A), 7cji(A), 7cjj(A), 7cou(A), 7czl(A), 7d1t(A), 7d1u(A),
		5. Ligand: LHG × 108 1,2-Dipalmitoyl-Phosphatidyl-Glycerole PDB codes: 3a0b(A), 3a0h(A), 3wu2(A), 4il6(A), 4ub6(A), 4ub8(A), 5b5e(A), 5b66(A), 5gth(A), 5gti(A), 5v2c(A), 5ws5(A), 5ws6(A), 6jlj(A), 6jlk(A), 6jll(A), 6jlm(A), 6jln(A), 6jlo(A), 6jlp(A), 7cji(A), 7cjj(A), 7cou(A), 7czl(A), 7d1t(A), 7d1u(A),
		6. Ligand: DGD × 78 Digalactosyl diacyl glycerol (dgdg) PDB codes: 3a0b(A), 3a0h(A), 3wu2(A), 4il6(A), 4ub6(A), 4ub8(A), 5b5e(A), 5b66(A), 5gth(A), 5gti(A), 5v2c(A), 5ws5(A), 5ws6(A), 6jlj(A), 6jlk(A), 6jll(A), 6jlm(A), 6jln(A), 6jlo(A), 6jlp(A), 7cji(A), 7cjj(A), 7cou(A), 7czl(A), 7d1t(A), 7d1u(A),
		7. Ligand: PHO × 54 Pheophytin a PDB codes: 1izl(A), 3a0b(A), 3a0h(A), 3wu2(A), 4il6(A), 4ub6(A), 4ub8(A), 5b5e(A), 5b66(A), 5gth(A), 5gti(A), 5v2c(A), 5ws5(A), 5ws6(A), 6jlj(A), 6jlk(A), 6jll(A), 6jlm(A), 6jln(A), 6jlo(A), 6jlp(A), 7cji(A), 7cjj(A), 7cou(A), 7czl(A), 7d1t(A), 7d1u(A),
		8. Ligand: LMT × 51 Dodecyl-Beta-D-Maltoside PDB codes: 3wu2(A), 4il6(A), 4ub6(A), 4ub8(A), 5b5e(A), 5b66(A), 5gth(A), 5gti(A), 5v2c(A), 5ws5(A), 5ws6(A), 6jlj(A), 6jlk(A), 6jll(A), 6jlm(A), 6jln(A), 6jlo(A), 6jlp(A), 7cji(A), 7cjj(A), 7cou(A), 7czl(A), 7d1t(A), 7d1u(A).
		9. Ligand: SQD × 49 1,2-Di-O-Acyl-3-O-[6-Deoxy-6-Sulfo-Alpha-D- Glucopyranosyl]-Sn-Glycerol PDB codes: 3wu2(A), 4il6(A), 4ub6(A), 4ub8(A), 5b5e(A), 5b66(A), 5gth(A), 5gti(A), 5v2c(A), 5ws5(A), 5ws6(A), 6jlj(A), 6jlk(A), 6jll(A), 6jlm(A), 6jln(A), 6jlo(A), 6jlp(A), 7cji(A), 7cjj(A), 7cou(A), 7czl(A), 7d1t(A), 7d1u(A),
		10. Ligand: UNL × 49 Unknown ligand PDB codes: 3wu2(A), 4il6(A), 4ub6(A), 4ub8(A), 5b5e(A), 5b66(A), 5gth(A), 5gti(A), 5ws5(A), 5ws6(A), 6jlj(A), 6jlk(A), 6jll(A), 6jlm(A), 6jln(A), 6jlo(A), 6jlp(A), 7cji(A), 7cjj(A), 7cou(A), 7d1t(A), 7d1u(A),
		11. Ligand: PL9 × 46 2,3-Dimethyl-5-(3,7,11,15,19,23,27,31,35-Nonamethyl-2, 6,10,14,18,22,26,30,34- Hexatriacontanonaenyl-2,5- Cyclohexadiene-1,4-Dione-2,3-Dimethyl-5-Solanesyl-1,4- Benzoquinone PDB codes: 3wu2(A), 4il6(A), 4ub6(A), 4ub8(A), 5b5e(A), 5b66(A), 5gth(A), 5gti(A), 5v2c(A), 5ws5(A), 5ws6(A), 6jlj(A), 6jlk(A), 6jll(A), 6jlm(A), 6jln(A), 6jlo(A), 6jlp(A), 7cji(A), 7cjj(A), 7cou(A), 7d1t(A), 7d1u(A),
		12. Ligand: HTG × 40 Heptyl 1-Thio-Beta-D-Glucopyranoside PDB codes: 3wu2(A), 4il6(A), 4ub6(A), 4ub8(A), 5b5e(A), 5b66(A), 5gth(A), 5gti(A), 5v2c(A), 5ws5(A), 5ws6(A), 6jlj(A), 6jlk(A), 6jll(A), 6jlm(A), 6jln(A), 6jlo(A), 6jlp(A), 7cji(A), 7cjj(A), 7cou(A),
		13. Ligand: LMG × 23 1,2-Distearoyl-Monogalactosyl-Diglyceride PDB codes: 3wu2(A), 4il6(A), 4ub6(A), 4ub8(A), 5b5e(A), 5b66(A), 5gth(A), 5gti(A), 5v2c(A), 5ws5(A), 5ws6(A), 6jlj(A), 6jlk(A), 6jll(A), 6jlm(A), 6jln(A), 6jlo(A), 6jlp(A), 7cji(A), 7cjj(A), 7cou(A), 7d1t(A), 7d1u(A).
		14. Ligand: MGE × 6 (1s)-2-(Alpha-L-Allopyranosyloxy)-1-[(Tridecanoyloxy) methyl]ethyl palmitate PDB codes: 3a0b(A), 3a0h(A), 7czl(A),
		15. Ligand: PQ9 × 4 5-[(2e,6e,10e,14e,18e,22e)-3,7,11,15,19,23,27- Heptamethyloctacosa-2,6,10,14,18,22,26-Heptaenyl]- 2,3- Dimethylbenzo-1,4-Quinone PDB codes: 3a0b(A), 3a0h(A), 7czl(A),
		16. Ligand: P6G × 2 Hexaethylene glycol PDB codes: 5v2c(A),
		17. Ligand: PG4 × 2 Tetraethylene glycol PDB codes: 5v2c(A),

Cluster 2 contains 5 ligand types

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Ligand		Description
_Mn		1. Metal: _MN × 1 PDB code: 1izl(A).
		2. Ligand: OEX × 22 Ca-Mn4-O5 cluster PDB codes: 3wu2(A), 4ub6(A), 4ub8(A), 5b5e(A), 5b66(A), 5gth(A), 5gti(A), 5v2c(A), 5ws5(A), 5ws6(A), 6jlj(A), 6jlk(A), 6jll(A), 6jlm(A), 6jln(A), 6jlo(A), 6jlp(A), 7cji(A), 7cjj(A), 7cou(A), 7d1t(A), 7d1u(A).
		3. Ligand: OEY × 5 Ca-Mn4-O6 cluster PDB codes: 5ws6(A), 6jll(A), 6jln(A), 6jlo(A), 6jlp(A).
		4. Ligand: OEC × 2 Oxygen evolving system PDB codes: 3a0b(A), 3a0h(A).
		5. Ligand: OER × 1 Sr-Mn4-O5 cluster PDB code: 4il6(A).

Cluster 3 contains 2 ligand types

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Ligand		Description
		1. Ligand: GOL × 11 glycerin Glycerol PDB codes: 3wu2(A), 4ub6(A), 4ub8(A), 5v2c(A), 6jlj(A), 6jlk(A), 6jll(A), 6jlm(A), 6jln(A), 6jlo(A), 6jlp(A).
		2. Ligand: DMS × 2 dimethyl sulfoxide Dimethyl sulfoxide PDB codes: 5b5e(A), 5b66(A).

Cluster 4 contains 2 ligand types

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Ligand		Description
		1. Ligand: GOL × 18 glycerin Glycerol PDB codes: 3wu2(A), 4ub6(A), 4ub8(A), 5gth(A), 5gti(A), 5v2c(A), 5ws5(A), 5ws6(A), 6jlj(A), 6jlk(A), 6jll(A), 6jlm(A), 6jln(A), 6jlo(A), 6jlp(A), 7cji(A), 7cjj(A), 7cou(A).
		2. Ligand: DMS × 2 dimethyl sulfoxide Dimethyl sulfoxide PDB codes: 5b5e(A), 5b66(A).

Cluster 5 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 11 glycerin Glycerol PDB codes: 3wu2(A), 4ub6(A), 4ub8(A), 5v2c(A), 6jlj(A), 6jlk(A), 6jll(A), 6jlm(A), 6jln(A), 6jlo(A), 6jlp(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 11 glycerin Glycerol PDB codes: 3wu2(A), 4ub6(A), 4ub8(A), 5v2c(A), 6jlj(A), 6jlk(A), 6jll(A), 6jlm(A), 6jln(A), 6jlo(A), 6jlp(A).