Ligand clusters for UniProt code P49302

Ligand clusters for P49302: Capsid protein VP1 from Murine polyomavirus (strain P16 small-plaque)

		Top 6 (of 11) ligand clusters Cluster 1. 6 ligand types 8 ligands Cluster 2. 6 ligand types 12 ligands Cluster 3. 1 ligand type 5 ligands Cluster 4. 1 ligand type 6 ligands Cluster 5. 1 ligand type 2 ligands Cluster 6. 1 ligand type 1 ligand
Representative protein: 1sidA

Structures

PDB		Schematic diagram
1sidA
1sieA
1sidD
1sieD
1vpsA
		more ...

Cluster 1 contains 6 ligand types

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Ligand		Description
		1. Ligand: GAL-NGA-GAL-SIA × 2 GAL=Beta-D-Galactopyranose, NGA=2-Acetamido-2-Deoxy-Beta-D-Galactopyranose, SIA=N-Acetyl-Alpha-Neuraminic acid. PDB codes: 5cpy(A), 5cq0(A).
		2. Ligand: NAG-GAL-SIA-SIA × 2 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, GAL=Beta-D-Galactopyranose, SIA=N-Acetyl-Alpha-Neuraminic acid. PDB codes: 1sie(A), 1vps(A).
		3. Ligand: BGC-GAL-SIA × 1 BGC=Beta-D-Glucopyranose, GAL=Beta-D-Galactopyranose, SIA=N-Acetyl-Alpha-Neuraminic acid. PDB code: 1sid(A).
		4. Ligand: GAL-NGA-GAL-SIA-SIA × 1 GAL=Beta-D-Galactopyranose, NGA=2-Acetamido-2-Deoxy-Beta-D-Galactopyranose, SIA=N-Acetyl-Alpha-Neuraminic acid. PDB code: 5cpz(A).
		5. Ligand: GAL-NGA-GAL-SIA-SIA-SIA × 1 GAL=Beta-D-Galactopyranose, NGA=2-Acetamido-2-Deoxy-Beta-D-Galactopyranose, SIA=N-Acetyl-Alpha-Neuraminic acid. PDB code: 5cpw(A).
		6. Ligand: NAG-GAL-SIA × 1 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, GAL=Beta-D-Galactopyranose, SIA=N-Acetyl-Alpha-Neuraminic acid. PDB code: 5cpx(A).

Cluster 2 contains 6 ligand types

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Ligand		Description
		1. Ligand: GOL × 2 glycerin Glycerol PDB codes: 5cpz(A), 5cq0(A).
		2. Ligand: NAG-GAL-SIA-SIA × 3 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, GAL=Beta-D-Galactopyranose, SIA=N-Acetyl-Alpha-Neuraminic acid. PDB codes: 1sie(A), 1vps(A).
		3. Ligand: BGC-GAL-SIA × 2 BGC=Beta-D-Glucopyranose, GAL=Beta-D-Galactopyranose, SIA=N-Acetyl-Alpha-Neuraminic acid. PDB codes: 1sid(A),
		4. Ligand: GAL-NGA-GAL-SIA × 2 GAL=Beta-D-Galactopyranose, NGA=2-Acetamido-2-Deoxy-Beta-D-Galactopyranose, SIA=N-Acetyl-Alpha-Neuraminic acid. PDB codes: 5cpy(A), 5cq0(A).
		5. Ligand: GAL-NGA-GAL-SIA-SIA × 2 GAL=Beta-D-Galactopyranose, NGA=2-Acetamido-2-Deoxy-Beta-D-Galactopyranose, SIA=N-Acetyl-Alpha-Neuraminic acid. PDB codes: 5cpw(A), 5cpz(A).
		6. Ligand: NAG-GAL-SIA × 1 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, GAL=Beta-D-Galactopyranose, SIA=N-Acetyl-Alpha-Neuraminic acid. PDB code: 5cpx(A).

Cluster 3 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 5 glycerin Glycerol PDB codes: 5cpu(A), 5cpw(A), 5cpy(A), 5cpz(A), 5cq0(A).

Cluster 4 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 6 glycerin Glycerol PDB codes: 5cpu(A), 5cpw(A), 5cpx(A), 5cpy(A), 5cpz(A), 5cq0(A).

Cluster 5 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 2 glycerin Glycerol PDB codes: 5cpz(A), 5cq0(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 5cpz(A).