Ligand clusters for UniProt code P43912

Ligand clusters for P43912: tRNA (guanine-N(1)-)-methyltransferase from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

		Top 6 (of 8) ligand clusters Cluster 1. 35 ligand types 42 ligands Cluster 2. 3 ligand types 5 ligands Cluster 3. 2 ligand types 3 ligands Cluster 4. 1 ligand type 1 ligand Cluster 5. 2 ligand types 2 ligands Cluster 6. 1 ligand type 1 ligand
Representative protein: 1uamA

Structures

PDB		Schematic diagram
1uamA
4yq5A
4yq9A
3axzA
4yq4A
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Cluster 1 contains 35 ligand types (of which only 20 are listed. Click for all)

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Ligand		Description
		1. Ligand: SAH × 2 S-Adenosyl-L-Homocysteine PDB codes: 1ual(A), 1uam(A).
		2. Ligand: SAM × 2 ademetionine S-Adenosylmethionine PDB codes: 1uak(A), 4yvg(A).
		3. Ligand: ADN × 1 adenosine Adenosine PDB code: 3axz(A).
		4. Ligand: SFG × 4 Sinefungin PDB codes: 4yvh(A), 4yvi(A), 4yvj(A), 4yvk(A).
		5. Ligand: 21W × 2 N-(4-{[(1h-Imidazol-2-Ylmethyl)amino]methyl}benzyl)-4- Oxo-3,4-Dihydrothieno[2,3-D]pyrimidine-5- Carboxamide PDB codes: 4mcb(A),
		6. Ligand: 21X × 2 N-[4-(Aminomethyl)benzyl]-4-Oxo-3,4-Dihydrothieno[2,3- D]pyrimidine-5-Carboxamide PDB codes: 4mcc(A),
		7. Ligand: 22L × 1 5-Phenylthieno[2,3-D]pyrimidin-4(3h)-One PDB code: 4mcd(A).
		8. Ligand: 4F9 × 1 4-(1h-Imidazol-5-Yl)pyridine PDB code: 4ypy(A).
		9. Ligand: 4FD × 1 6-(Benzylamino)pyridine-3-Carboxamide PDB code: 4ypw(A).
		10. Ligand: 4FG × 1 6-Aminopyridine-3-Carboxamide PDB code: 4ypx(A).
		11. Ligand: 4FL × 1 4-(1h-Imidazol-2-Yl)pyridine PDB code: 4ypz(A).
		12. Ligand: 4FM × 1 4-Amino-N-(4-Chlorobenzyl)-1,2,5-Oxadiazole-3- Carboxamide PDB code: 4yq0(A).
		13. Ligand: 4FV × 1 4-Amino-N-[(1r,3s)-3-Hydroxycyclopentyl]-1,2,5- Oxadiazole-3-Carboxamide PDB code: 4yq8(A).
		14. Ligand: 4FX × 1 6-[(2-Methoxybenzyl)amino]pyridine-3-Carboxamide PDB code: 4yq6(A).
		15. Ligand: 4G0 × 1 6-{[3-(Dimethylamino)benzyl]amino}pyridine-3- Carboxamide PDB code: 4yq5(A).
		16. Ligand: 4G3 × 1 6-[(3-Hydroxybenzyl)amino]pyridine-3-Carboxamide PDB code: 4yq4(A).
		17. Ligand: 4G4 × 1 6-{[2-(Dimethylamino)benzyl]amino}pyridine-3- Carboxamide PDB code: 4yq7(A).
		18. Ligand: 4GM × 1 6-[(2-Hydroxybenzyl)amino]pyridine-3-Carboxamide PDB code: 4yqb(A).
		19. Ligand: 4GN × 1 6-[(Cyclopentylmethyl)amino]pyridine-3-Carboxamide PDB code: 4yqa(A).
		20. Ligand: 4GO × 1 6-(Cyclopentylamino)pyridine-3-Carboxamide PDB code: 4yq9(A).
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Cluster 2 contains 3 ligand types

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Ligand		Description
		1. Ligand: SFG × 3 Sinefungin PDB codes: 4yvi(A), 4yvj(A), 4yvk(A).
		2. Ligand: 21W × 1 N-(4-{[(1h-Imidazol-2-Ylmethyl)amino]methyl}benzyl)-4- Oxo-3,4-Dihydrothieno[2,3-D]pyrimidine-5- Carboxamide PDB code: 4mcb(B).
		3. Ligand: 21X × 1 N-[4-(Aminomethyl)benzyl]-4-Oxo-3,4-Dihydrothieno[2,3- D]pyrimidine-5-Carboxamide PDB code: 4mcc(B).

Cluster 3 contains 2 ligand types

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Ligand		Description
		1. Ligand: PO4 × 1 Phosphate ion PDB code: 1uam(A).
		2. Ligand: FLC × 2 Citrate anion PDB codes: 4ypy(A), 4yq4(A).

Cluster 4 contains 1 ligand type

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Ligand		Description
		1. Ligand: FLC × 1 Citrate anion PDB code: 4yq5(A).

Cluster 5 contains 2 ligand types

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 4mcb(A).
		2. Ligand: SO4 × 1 Sulfate ion PDB code: 4mcb(B).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: SO4 × 1 Sulfate ion PDB code: 4mcb(A).