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Ligand clusters for UniProt code P40859

Ligand clusters for P40859: Monomeric sarcosine oxidase OS=Bacillus sp. (strain B-0618) GN=soxA PE=1 SV=2

6 ligand clusters
Cluster 1.
12 ligand types
48 ligands
Cluster 2.
1 ligand type
1 ligand
Cluster 3.
1 ligand type
2 ligands
Cluster 4.
1 ligand type
7 ligands
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
1 ligand type
1 ligand
Representative protein: 2gb0A  
JSmol
 

Structures

PDB   Schematic diagram
2gb0A    
2a89A    
1el9A    
1l9eA    
3qseA    
 more ...

 

 Cluster 1 contains 12 ligand types

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Ligand Description


 
1. Ligand: FAD × 18
flavin adenine dinucleotide
Flavin-Adenine dinucleotide
PDB codes: 1el5(A), 1el7(A), 1el8(A), 1el9(A), 1eli(A), 1l9c(A), 1l9d(A), 1l9e(A), 2gb0(A), 2gf3(A), 3bhf(A), 3bhk(A), 3m0o(A), 3m12(A), 3m13(A), 3qse(A), 3qsm(A), 3qss(A).


 
2. Ligand: FCG × 1
(N5,C4a)-(Alpha-Hydroxy-Propano)-3,4,4a,5-Tetrahydro- Flavin-Adenine dinucleotide
PDB code: 2a89(A).


 
3. Ligand: DMG × 1
N,N-Dimethylglycine
PDB code: 1el5(A).


 
4. Ligand: MTG × 1
[Methylthio]acetate
PDB code: 1el9(A).


 
5. Ligand: MSF × 1
[Methylseleno]acetate
PDB code: 1el8(A).


 
6. Ligand: MTD × 1
[Methyltelluro]acetate
PDB code: 1el7(A).


 
7. Ligand: PYC × 2
Pyrrole-2-Carboxylate
PDB codes: 1eli(A), 1l9d(A).


 
8. Ligand: FOA × 1
2-Furoic acid
PDB code: 2gf3(A).


 
9. Ligand: IMD × 1
Imidazole
PDB code: 1l9e(A).

_Cl
 
10. Metal: _CL × 19
PDB codes: 1el5(A), 1el7(A), 1el8(A), 1el9(A), 1eli(A), 1l9c(A), 1l9d(A), 1l9e(A), 2a89(A), 2gb0(A), 2gf3(A), 3m0o(A), 3m12(A), 3m13(A), 3qse(A), 3qsm(A), 3qss(A),


 
11. Ligand: MTG × 1
[Methylthio]acetate
PDB code: 3qss(A).


 
12. Ligand: SAR × 1
Sarcosine
PDB code: 3qse(A).

 

 Cluster 2 contains 1 ligand type

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Ligand Description


 
1. Ligand: FOA × 1
2-Furoic acid
PDB code: 2gf3(A).

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: GOL × 2
glycerin
Glycerol
PDB codes: 2gf3(A), 3bhk(A).

 

 Cluster 4 contains 1 ligand type

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Ligand Description


 
1. Ligand: PO4 × 7
Phosphate ion
PDB codes: 1el5(A), 1el7(A), 1el8(A), 1el9(A), 1eli(A), 2gb0(A), 2gf3(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description

_Te
 
1. Metal: _TE × 1
PDB code: 1el7(A).

 

 Cluster 6 contains 1 ligand type

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Ligand Description

_Cl
 
1. Metal: _CL × 1
PDB code: 2a89(A).

 

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