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Ligand clusters for UniProt code P40859
Ligand clusters for P40859: Monomeric sarcosine oxidase OS=Bacillus sp. (strain B-0618) GN=soxA PE=1 SV=2
6 ligand clusters
Cluster 1.
12 ligand types
48 ligands
Cluster 2.
1 ligand type
1 ligand
Cluster 3.
1 ligand type
2 ligands
Cluster 4.
1 ligand type
7 ligands
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
1 ligand type
1 ligand
Representative protein: 2gb0A
Structures
PDB
Schematic diagram
2gb0
A
2a89
A
1el9
A
1l9e
A
3qse
A
more ...
Cluster 1 contains 12 ligand types
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Ligand
Description
1. Ligand:
FAD × 18
flavin adenine dinucleotide
Flavin-Adenine dinucleotide
PDB codes:
1el5
(A),
1el7
(A),
1el8
(A),
1el9
(A),
1eli
(A),
1l9c
(A),
1l9d
(A),
1l9e
(A),
2gb0
(A),
2gf3
(A),
3bhf
(A),
3bhk
(A),
3m0o
(A),
3m12
(A),
3m13
(A),
3qse
(A),
3qsm
(A),
3qss
(A).
2. Ligand:
FCG × 1
(N5,C4a)-(Alpha-Hydroxy-Propano)-3,4,4a,5-Tetrahydro- Flavin-Adenine dinucleotide
PDB code:
2a89
(A).
3. Ligand:
DMG × 1
N,N-Dimethylglycine
PDB code:
1el5
(A).
4. Ligand:
MTG × 1
[Methylthio]acetate
PDB code:
1el9
(A).
5. Ligand:
MSF × 1
[Methylseleno]acetate
PDB code:
1el8
(A).
6. Ligand:
MTD × 1
[Methyltelluro]acetate
PDB code:
1el7
(A).
7. Ligand:
PYC × 2
Pyrrole-2-Carboxylate
PDB codes:
1eli
(A),
1l9d
(A).
8. Ligand:
FOA × 1
2-Furoic acid
PDB code:
2gf3
(A).
9. Ligand:
IMD × 1
Imidazole
PDB code:
1l9e
(A).
_Cl
10. Metal:
_CL × 19
PDB codes:
1el5
(A),
1el7
(A),
1el8
(A),
1el9
(A),
1eli
(A),
1l9c
(A),
1l9d
(A),
1l9e
(A),
2a89
(A),
2gb0
(A),
2gf3
(A),
3m0o
(A),
3m12
(A),
3m13
(A),
3qse
(A),
3qsm
(A),
3qss
(A),
11. Ligand:
MTG × 1
[Methylthio]acetate
PDB code:
3qss
(A).
12. Ligand:
SAR × 1
Sarcosine
PDB code:
3qse
(A).
Cluster 2 contains 1 ligand type
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Ligand
Description
1. Ligand:
FOA × 1
2-Furoic acid
PDB code:
2gf3
(A).
Cluster 3 contains 1 ligand type
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Ligand
Description
1. Ligand:
GOL × 2
glycerin
Glycerol
PDB codes:
2gf3
(A),
3bhk
(A).
Cluster 4 contains 1 ligand type
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Ligand
Description
1. Ligand:
PO4 × 7
Phosphate ion
PDB codes:
1el5
(A),
1el7
(A),
1el8
(A),
1el9
(A),
1eli
(A),
2gb0
(A),
2gf3
(A).
Cluster 5 contains 1 ligand type
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Ligand
Description
_Te
1. Metal:
_TE × 1
PDB code:
1el7
(A).
Cluster 6 contains 1 ligand type
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Ligand
Description
_Cl
1. Metal:
_CL × 1
PDB code:
2a89
(A).