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EBI
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Ligand clusters for UniProt code P31892
Ligand clusters for P31892: Uptake hydrogenase small subunit from Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337)
Top 6 (of 8) ligand clusters
Cluster 1.
2 ligand types
8 ligands
Cluster 2.
1 ligand type
8 ligands
Cluster 3.
1 ligand type
8 ligands
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
1 ligand type
7 ligands
Representative protein: 3rgwS
Structures
PDB
Schematic diagram
3rgw
S
5mdk
S
4ttt
S
5d51
S
4iud
S
more ...
Cluster 1 contains 2 ligand types
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Ligand
Description
1. Ligand:
F4S × 5
Fe4-S3 cluster
PDB codes:
3rgw
(S),
4ttt
(S),
5d51
(S),
5mdj
(S),
5mdk
(S).
2. Ligand:
S3F × 3
Oxidized [fe4-S3] cluster
PDB codes:
4iub
(S),
4iuc
(S),
4iud
(S).
Cluster 2 contains 1 ligand type
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Ligand
Description
1. Ligand:
SF4 × 8
Iron/sulfur cluster
PDB codes:
3rgw
(S),
4iub
(S),
4iuc
(S),
4iud
(S),
4ttt
(S),
5d51
(S),
5mdj
(S),
5mdk
(S).
Cluster 3 contains 1 ligand type
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Ligand
Description
1. Ligand:
F3S × 8
Fe3-S4 cluster
PDB codes:
3rgw
(S),
4iub
(S),
4iuc
(S),
4iud
(S),
4ttt
(S),
5d51
(S),
5mdj
(S),
5mdk
(S).
Cluster 4 contains 1 ligand type
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Ligand
Description
1. Ligand:
PO4 × 1
Phosphate ion
PDB code:
4iub
(S).
Cluster 5 contains 1 ligand type
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Ligand
Description
1. Ligand:
PO4 × 1
Phosphate ion
PDB code:
4iub
(S).
Cluster 6 contains 1 ligand type
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Ligand
Description
_Cl
1. Metal:
_CL × 7
PDB codes:
4iub
(S),
4iuc
(S),
4iud
(S),
4ttt
(S),
5d51
(S),
5mdj
(S),
5mdk
(S).