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Ligand clusters for UniProt code P29600

Ligand clusters for P29600: Subtilisin Savinase OS=Bacillus lentus PE=1 SV=1

Top 6 (of 20) ligand clusters
Cluster 1.
5 ligand types
17 ligands
Cluster 2.
2 ligand types
3 ligands
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
2 ligand types
2 ligands
Cluster 5.
2 ligand types
2 ligands
Cluster 6.
1 ligand type
3 ligands
Representative protein: 1c9jA  
JSmol
 

Structures

PDB   Schematic diagram
1c9jA    
5arcA    
5ardA    
5aqeA    
1gciA    
 more ...

 

 Cluster 1 contains 5 ligand types

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Ligand Description


 
1. Ligand: GOL × 2
glycerin
Glycerol
PDB codes: 5arb(A), 5ard(A).


 
2. Ligand: SO4 × 10
Sulfate ion
PDB codes: 1c9j(A), 1c9m(A), 1c9n(A), 1gci(A), 1iav(A), 1jea(A), 1q5p(A), 4cfz(A), 5aqe(A), 5arc(A).


 
3. Ligand: EI3 × 3
5-Methyl-2-(5-Methylpyridin-2-Yl)pyridine
PDB codes: 5arb(A), 5arc(A), 5ard(A).


 
4. Ligand: VAL-ORN-LEU-DPN-PRO-VAL-ORN-LEU-DPN-PRO × 1
ORN=L-Ornithine, DPN=D-Phenylalanine.
PDB code: 1tk2(A).


 
5. Ligand: VOD × 1
(4-Vinylphenyl)methanesulfonic acid
PDB code: 5aqe(A).

 

 Cluster 2 contains 2 ligand types

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Ligand Description


 
1. Ligand: GOL × 1
glycerin
Glycerol
PDB code: 5arb(A).

_Cl
 
2. Metal: _CL × 2
PDB codes: 3bx1(A), 5arb(A).

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: GOL × 1
glycerin
Glycerol
PDB code: 1gci(A).

 

 Cluster 4 contains 2 ligand types

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Ligand Description


 
1. Ligand: SO4 × 1
Sulfate ion
PDB code: 4cfz(A).

_Cl
 
2. Metal: _CL × 1
PDB code: 3bx1(A).

 

 Cluster 5 contains 2 ligand types

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Ligand Description


 
1. Ligand: SO4 × 1
Sulfate ion
PDB code: 4cfz(A).

_Cl
 
2. Metal: _CL × 1
PDB code: 3bx1(A).

 

 Cluster 6 contains 1 ligand type

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Ligand Description


 
1. Ligand: GOL × 3
glycerin
Glycerol
PDB codes: 5aqe(A), 5arb(A), 5arc(A).

 

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