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EBI
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PDBsum
Ligand clusters for UniProt code P29600
Ligand clusters for P29600: Subtilisin Savinase OS=Bacillus lentus PE=1 SV=1
Top 6 (of 20) ligand clusters
Cluster 1.
5 ligand types
17 ligands
Cluster 2.
2 ligand types
3 ligands
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
2 ligand types
2 ligands
Cluster 5.
2 ligand types
2 ligands
Cluster 6.
1 ligand type
3 ligands
Representative protein: 1c9jA
Structures
PDB
Schematic diagram
1c9j
A
5arc
A
5ard
A
5aqe
A
1gci
A
more ...
Cluster 1 contains 5 ligand types
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Ligand
Description
1. Ligand:
GOL × 2
glycerin
Glycerol
PDB codes:
5arb
(A),
5ard
(A).
2. Ligand:
SO4 × 10
Sulfate ion
PDB codes:
1c9j
(A),
1c9m
(A),
1c9n
(A),
1gci
(A),
1iav
(A),
1jea
(A),
1q5p
(A),
4cfz
(A),
5aqe
(A),
5arc
(A).
3. Ligand:
EI3 × 3
5-Methyl-2-(5-Methylpyridin-2-Yl)pyridine
PDB codes:
5arb
(A),
5arc
(A),
5ard
(A).
4. Ligand:
VAL-ORN-LEU-DPN-PRO-VAL-ORN-LEU-DPN-PRO × 1
ORN
=L-Ornithine,
DPN
=D-Phenylalanine.
PDB code:
1tk2
(A).
5. Ligand:
VOD × 1
(4-Vinylphenyl)methanesulfonic acid
PDB code:
5aqe
(A).
Cluster 2 contains 2 ligand types
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Ligand
Description
1. Ligand:
GOL × 1
glycerin
Glycerol
PDB code:
5arb
(A).
_Cl
2. Metal:
_CL × 2
PDB codes:
3bx1
(A),
5arb
(A).
Cluster 3 contains 1 ligand type
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Ligand
Description
1. Ligand:
GOL × 1
glycerin
Glycerol
PDB code:
1gci
(A).
Cluster 4 contains 2 ligand types
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Ligand
Description
1. Ligand:
SO4 × 1
Sulfate ion
PDB code:
4cfz
(A).
_Cl
2. Metal:
_CL × 1
PDB code:
3bx1
(A).
Cluster 5 contains 2 ligand types
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Ligand
Description
1. Ligand:
SO4 × 1
Sulfate ion
PDB code:
4cfz
(A).
_Cl
2. Metal:
_CL × 1
PDB code:
3bx1
(A).
Cluster 6 contains 1 ligand type
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Ligand
Description
1. Ligand:
GOL × 3
glycerin
Glycerol
PDB codes:
5aqe
(A),
5arb
(A),
5arc
(A).