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Ligand clusters for UniProt code P29255
Ligand clusters for P29255: Photosystem I P700 chlorophyll a apoprotein A2 from Synechocystis sp. (strain PCC 6803 / Kazusa)
4 ligand clusters
Cluster 1.
15 ligand types
342 ligands
Cluster 2.
1 ligand type
5 ligands
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
1 ligand type
1 ligand
Representative protein: 6uzvB
Structures
PDB
Schematic diagram
6uzv
B
4l6v
B
4kt0
B
6hqb
B
5oy0
B
Cluster 1 contains 15 ligand types
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Ligand
Description
1. Ligand:
BCR × 46
beta carotene
Beta-Carotene
PDB codes:
4kt0
(B),
4l6v
(B),
5oy0
(B),
6hqb
(B),
6uzv
(B),
2. Ligand:
PQN × 5
phylloquinone
Phylloquinone
PDB codes:
4kt0
(B),
4l6v
(B),
5oy0
(B),
6hqb
(B),
6uzv
(B).
3. Ligand:
C7Z × 1
zeaxanthin
(1~{s})-3,5,5-Trimethyl-4-[(1~{e},3~{e},5~{e},7~{e}, 9~{e},11~{e},13~{e},15~{e},17~{e})-3,7,12,16-
Tetramethyl-18-[(4~{s})-2,6,6-Trimethyl-4-Oxidanyl- Cyclohexen-1-Yl]octadeca-
1,3,5,7,9,11,13,15,17- Nonaenyl]cyclohex-3-En-1-Ol
PDB code:
6hqb
(B).
_Mg
4. Metal:
_MG × 1
PDB code:
5oy0
(B).
5. Ligand:
CLA × 253
Chlorophyll a
PDB codes:
4kt0
(B),
4l6v
(B),
5oy0
(B),
6hqb
(B),
6uzv
(B),
6. Ligand:
LHG × 11
1,2-Dipalmitoyl-Phosphatidyl-Glycerole
PDB codes:
4kt0
(B),
4l6v
(B),
5oy0
(B),
6hqb
(B),
6uzv
(B).
7. Ligand:
LMG × 7
1,2-Distearoyl-Monogalactosyl-Diglyceride
PDB codes:
4kt0
(B),
4l6v
(B),
5oy0
(B),
6hqb
(B),
6uzv
(B).
8. Ligand:
ECH × 4
Beta,Beta-Caroten-4-One
PDB codes:
5oy0
(B),
6hqb
(B),
9. Ligand:
SQD × 4
1,2-Di-O-Acyl-3-O-[6-Deoxy-6-Sulfo-Alpha-D- Glucopyranosyl]-Sn-Glycerol
PDB codes:
5oy0
(B),
6hqb
(B),
10. Ligand:
45D × 2
Beta,Beta-Carotene-4,4'-Dione
PDB codes:
5oy0
(B),
6hqb
(B).
11. Ligand:
CL0 × 2
Chlorophyll a isomer
PDB codes:
4kt0
(B),
6uzv
(B).
12. Ligand:
EQ3 × 2
(3'R)-3'-Hydroxy-Beta,Beta-Caroten-4-One
PDB codes:
5oy0
(B),
6hqb
(B).
_Ca
13. Metal:
_CA × 2
PDB codes:
5oy0
(B),
6hqb
(B).
14. Ligand:
LMU × 1
Dodecyl-Alpha-D-Maltoside
PDB code:
4kt0
(B).
15. Ligand:
ZEX × 1
(1r,2s)-4-{(1e,3e,5e,7e,9e,11e,13e,15e,17e)-18-[(4s)-4- Hydroxy-2,6,6-Trimethylcyclohex-1-En-1-Yl]-
3,7,12,16- Tetramethyloctadeca-1,3,5,7,9,11,13,15,17-Nonaen-1- Yl}-2,5,5-Trimethylcyclohex-3-En-1-
Ol
PDB code:
5oy0
(B).
Cluster 2 contains 1 ligand type
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Ligand
Description
1. Ligand:
SF4 × 5
Iron/sulfur cluster
PDB codes:
4kt0
(B),
4l6v
(B),
5oy0
(B),
6hqb
(B),
6uzv
(B).
Cluster 3 contains 1 ligand type
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Ligand
Description
1. Ligand:
ACT × 1
Acetate ion
PDB code:
5oy0
(B).
Cluster 4 contains 1 ligand type
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Ligand
Description
1. Ligand:
ACT × 1
Acetate ion
PDB code:
5oy0
(B).