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Ligand clusters for UniProt code P29255

Ligand clusters for P29255: Photosystem I P700 chlorophyll a apoprotein A2 from Synechocystis sp. (strain PCC 6803 / Kazusa)

4 ligand clusters
Cluster 1.
15 ligand types
342 ligands
Cluster 2.
1 ligand type
5 ligands
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
1 ligand type
1 ligand
Representative protein: 6uzvB  
JSmol
 

Structures

PDB   Schematic diagram
6uzvB    
4l6vB    
4kt0B    
6hqbB    
5oy0B    

 

 Cluster 1 contains 15 ligand types

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Ligand Description


 
1. Ligand: BCR × 46
beta carotene
Beta-Carotene
PDB codes: 4kt0(B), 4l6v(B), 5oy0(B), 6hqb(B), 6uzv(B),


 
2. Ligand: PQN × 5
phylloquinone
Phylloquinone
PDB codes: 4kt0(B), 4l6v(B), 5oy0(B), 6hqb(B), 6uzv(B).


 
3. Ligand: C7Z × 1
zeaxanthin
(1~{s})-3,5,5-Trimethyl-4-[(1~{e},3~{e},5~{e},7~{e}, 9~{e},11~{e},13~{e},15~{e},17~{e})-3,7,12,16-
Tetramethyl-18-[(4~{s})-2,6,6-Trimethyl-4-Oxidanyl- Cyclohexen-1-Yl]octadeca-
1,3,5,7,9,11,13,15,17- Nonaenyl]cyclohex-3-En-1-Ol
PDB code: 6hqb(B).

_Mg
 
4. Metal: _MG × 1
PDB code: 5oy0(B).


 
5. Ligand: CLA × 253
Chlorophyll a
PDB codes: 4kt0(B), 4l6v(B), 5oy0(B), 6hqb(B), 6uzv(B),


 
6. Ligand: LHG × 11
1,2-Dipalmitoyl-Phosphatidyl-Glycerole
PDB codes: 4kt0(B), 4l6v(B), 5oy0(B), 6hqb(B), 6uzv(B).


 
7. Ligand: LMG × 7
1,2-Distearoyl-Monogalactosyl-Diglyceride
PDB codes: 4kt0(B), 4l6v(B), 5oy0(B), 6hqb(B), 6uzv(B).


 
8. Ligand: ECH × 4
Beta,Beta-Caroten-4-One
PDB codes: 5oy0(B), 6hqb(B),


 
9. Ligand: SQD × 4
1,2-Di-O-Acyl-3-O-[6-Deoxy-6-Sulfo-Alpha-D- Glucopyranosyl]-Sn-Glycerol
PDB codes: 5oy0(B), 6hqb(B),


 
10. Ligand: 45D × 2
Beta,Beta-Carotene-4,4'-Dione
PDB codes: 5oy0(B), 6hqb(B).


 
11. Ligand: CL0 × 2
Chlorophyll a isomer
PDB codes: 4kt0(B), 6uzv(B).


 
12. Ligand: EQ3 × 2
(3'R)-3'-Hydroxy-Beta,Beta-Caroten-4-One
PDB codes: 5oy0(B), 6hqb(B).

_Ca
 
13. Metal: _CA × 2
PDB codes: 5oy0(B), 6hqb(B).


 
14. Ligand: LMU × 1
Dodecyl-Alpha-D-Maltoside
PDB code: 4kt0(B).


 
15. Ligand: ZEX × 1
(1r,2s)-4-{(1e,3e,5e,7e,9e,11e,13e,15e,17e)-18-[(4s)-4- Hydroxy-2,6,6-Trimethylcyclohex-1-En-1-Yl]-
3,7,12,16- Tetramethyloctadeca-1,3,5,7,9,11,13,15,17-Nonaen-1- Yl}-2,5,5-Trimethylcyclohex-3-En-1-
Ol
PDB code: 5oy0(B).

 

 Cluster 2 contains 1 ligand type

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Ligand Description


 
1. Ligand: SF4 × 5
Iron/sulfur cluster
PDB codes: 4kt0(B), 4l6v(B), 5oy0(B), 6hqb(B), 6uzv(B).

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: ACT × 1
Acetate ion
PDB code: 5oy0(B).

 

 Cluster 4 contains 1 ligand type

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Ligand Description


 
1. Ligand: ACT × 1
Acetate ion
PDB code: 5oy0(B).

 

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