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EBI
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Ligand clusters for UniProt code P24474
Ligand clusters for P24474: Nitrite reductase from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Top 6 (of 10) ligand clusters
Cluster 1.
2 ligand types
8 ligands
Cluster 2.
2 ligand types
7 ligands
Cluster 3.
2 ligand types
3 ligands
Cluster 4.
1 ligand type
7 ligands
Cluster 5.
1 ligand type
7 ligands
Cluster 6.
1 ligand type
1 ligand
Representative protein: 1gjqA
Structures
PDB
Schematic diagram
1gjq
A
1bl9
A
6tsi
A
6tpo
A
1n15
A
more ...
Cluster 1 contains 2 ligand types
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Ligand
Description
1. Ligand:
DHE × 7
Heme d
PDB codes:
1bl9
(A),
1hzu
(A),
1n15
(A),
1n50
(A),
1n90
(A),
5guw
(M),
6tsi
(A).
2. Ligand:
DHE-CYN × 1
DHE
=Heme d,
CYN
=Cyanide ion.
PDB code:
1gjq
(A).
Cluster 2 contains 2 ligand types
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Ligand
Description
1. Ligand:
DHE × 6
Heme d
PDB codes:
1bl9
(A),
1n15
(A),
1n50
(A),
1n90
(A),
5guw
(M),
6tsi
(A).
2. Ligand:
DHE-CYN × 1
DHE
=Heme d,
CYN
=Cyanide ion.
PDB code:
1gjq
(A).
Cluster 3 contains 2 ligand types
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Ligand
Description
1. Ligand:
HEC × 2
Heme c
PDB codes:
1hzu
(A),
6tpo
(A).
2. Ligand:
PO4 × 1
Phosphate ion
PDB code:
6tsi
(A).
Cluster 4 contains 1 ligand type
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Ligand
Description
1. Ligand:
HEC × 7
Heme c
PDB codes:
1bl9
(A),
1gjq
(A),
1n15
(A),
1n50
(A),
1n90
(A),
5guw
(M),
6tsi
(A).
Cluster 5 contains 1 ligand type
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Ligand
Description
1. Ligand:
HEC × 7
Heme c
PDB codes:
1bl9
(A),
1gjq
(A),
1n15
(A),
1n50
(A),
1n90
(A),
5guw
(M),
6tsi
(A).
Cluster 6 contains 1 ligand type
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Ligand
Description
1. Ligand:
1PE × 1
Pentaethylene glycol
PDB code:
6tpo
(A).