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EBI
Databases
Structure Databases
PDBsum
Ligand clusters for UniProt code P21873
Ligand clusters for P21873: Pyruvate dehydrogenase E1 component subunit alpha from Geobacillus stearothermophilus
2 ligand clusters
Cluster 1.
4 ligand types
10 ligands
Cluster 2.
1 ligand type
1 ligand
Representative protein: 3dufA
Structures
PDB
Schematic diagram
3duf
A
3dva
A
1w88
A
1w85
A
3dv0
A
Cluster 1 contains 4 ligand types
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Ligand
Description
_Mg
1. Metal:
_MG × 5
PDB codes:
1w85
(A),
1w88
(A),
3duf
(A),
3dv0
(A),
3dva
(A).
2. Ligand:
TDP × 2
cocarboxylase
Thiamin diphosphate
PDB codes:
1w85
(A),
1w88
(A).
3. Ligand:
TPW × 2
2-{4-[(4-Amino-2-Methylpyrimidin-5-Yl)methyl]-3- Methylthiophen-2-Yl}ethyl trihydrogen diphosphate
PDB codes:
3dv0
(A),
3dva
(A).
4. Ligand:
R1T × 1
2-{4-[(4-Amino-2-Methylpyrimidin-5-Yl)methyl]-5-[(1r)- 1-Hydroxyethyl]-3-Methyl-2-
Thienyl}ethyl trihydrogen diphosphate
PDB code:
3duf
(A).
Cluster 2 contains 1 ligand type
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Ligand
Description
1. Ligand:
PEG × 1
Di(hydroxyethyl)ether
PDB code:
1w85
(A).