Ligand clusters for UniProt code P19793

Ligand clusters for P19793: Retinoic acid receptor RXR-alpha from Homo sapiens

		Top 6 (of 34) ligand clusters Cluster 1. 66 ligand types 120 ligands Cluster 2. 1 ligand type 3 ligands Cluster 3. 1 ligand type 1 ligand Cluster 4. 3 ligand types 4 ligands Cluster 5. 3 ligand types 4 ligands Cluster 6. 2 ligand types 2 ligands
Representative protein: 4nqaA

Structures

PDB		Schematic diagram
4nqaA
2p1tA
6jnrA
3pcuA
1rdtA
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Cluster 1 contains 66 ligand types (of which only 20 are listed. Click for all)

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Ligand		Description
		1. Ligand: 9CR × 15 alitretinoin (9cis)-Retinoic acid PDB codes: 1fby(A), 1fm6(A), 1fm9(A), 1k74(A), 1xls(A), 3oap(A), 3uvv(B), 4nqa(A), 5ji0(A), 5uan(A), 5z12(C), 6a5y(D), 6a5z(D), 6a60(D).
		2. Ligand: REA × 3 tretinoin Retinoic acid PDB codes: 2acl(A), 3fal(A), 3fc6(A).
		3. Ligand: 9RA × 2 bexarotene 4-[1-(3,5,5,8,8-Pentamethyl-5,6,7,8- Tetrahydronaphthalen-2-Yl)ethenyl]benzoic acid PDB codes: 3h0a(A), 4k6i(A).
		4. Ligand: ASP × 1 aspartic acid PDB code: 5lyq(A).
		5. Ligand: GOL × 1 glycerin Glycerol PDB code: 5tbp(B).
		6. Ligand: HXA × 1 doconexent Docosa-4,7,10,13,16,19-Hexaenoic acid PDB code: 1mv9(A).
		7. Ligand: PLM × 1 palmitic acid Palmitic acid PDB code: 7a77(A).
		8. Ligand: HIS-LYS-ILE-LEU-HIS-ARG-LEU-LEU-GLN-ASP × 14 PDB codes: 2p1t(A), 2p1u(A), 2p1v(A), 2zy0(A), 3e94(A), 3kwy(A), 3ozj(A), 3pcu(A), 3r5m(A), 4nqa(A), 4oc7(A), 5uan(A), 6lb5(A), 6lb6(A).
		9. Ligand: 7A4 × 5 [(1z)-5-Fluoro-2-Methyl-1-{[4-(Propan-2-Yl) phenyl]methylidene}-1h-Inden-3-Yl]acetic acid PDB codes: 5tbp(A),
		10. Ligand: HIS-LYS-ILE-LEU-HIS-ARG-LEU-LEU-GLN × 5 PDB codes: 1rdt(A), 5z12(C), 6jnr(A), 6l6k(A).
		11. Ligand: HIS-LYS-ILE-LEU-HIS-ARG-LEU-LEU-GLN-GLU × 5 PDB codes: 1fm6(A), 1fm9(A), 1k74(A), 1xv9(A), 1xvp(A).
		12. Ligand: 9HF × 3 1-(3,5,5,8,8-Pentamethyl-6,7-Dihydronaphthalen-2-Yl) benzotriazole-5-Carboxylic acid PDB codes: 5zqu(A), 6l6k(A).
		13. Ligand: ACT × 3 Acetate ion PDB codes: 3e94(A), 3kwy(A), 5tbp(B).
		14. Ligand: BM6 × 3 4-[2-(5,5,8,8-Tetramethyl-5,6,7,8-Tetrahydro- Naphthalen-2-Yl)-[1,3]dioxolan-2-Yl]-Benzoic acid PDB codes: 1mvc(A), 1mzn(A),
		15. Ligand: WY5 × 3 7-Oxidanyl-2-Oxidanylidene-6-(3,5,5,8,8-Pentamethyl-6, 7-Dihydronaphthalen-2-Yl)chromene-3- Carboxylic acid PDB codes: 5gym(A), 6jno(A), 6jnr(A).
		16. Ligand: WZ6 × 3 1-[3-(2-Ethoxyethoxy)-5,5,8,8-Tetramethyl-6,7- Dihydronaphthalen-2-Yl]-2- (Trifluoromethyl) benzimidazole-5-Carboxylic acid PDB codes: 7cfo(A),
		17. Ligand: F15 × 2 Pentadecanoic acid PDB codes: 1xv9(A), 1xvp(A).
		18. Ligand: LYS-HIS-LYS-ILE-LEU-HIS-ARG-LEU-LEU-GLN × 2 PDB codes: 5mk4(A), 6lb4(A).
		19. Ligand: 1O8 × 1 (2e,4e,6z,8e)-8-(3,4-Dihydronaphthalen-1(2h)-Ylidene)- 3,7-Dimethylocta-2,4,6-Trienoic acid PDB code: 4k4j(A).
		20. Ligand: 21P × 1 4-[2-(1,1,3,3-Tetramethyl-2,3-Dihydro-1h-1,3- Benzodisilol-5-Yl)-1,3-Dioxolan-2-Yl]benzoic acid PDB code: 2zy0(A).
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Cluster 2 contains 1 ligand type

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Ligand		Description
		1. Ligand: CPS × 3 3-[(3-Cholamidopropyl)dimethylammonio]-1- Propanesulfonate PDB codes: 6hn6(A),

Cluster 3 contains 1 ligand type

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Ligand		Description
		1. Ligand: CPS × 1 3-[(3-Cholamidopropyl)dimethylammonio]-1- Propanesulfonate PDB code: 6hn6(A).

Cluster 4 contains 3 ligand types

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 6xwg(C).
_Cl		2. Metal: _CL × 2 PDB codes: 4cn2(C), 4cn7(A).
		3. Ligand: MPO × 1 3[n-Morpholino]propane sulfonic acid PDB code: 6fbq(A).

Cluster 5 contains 3 ligand types

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 7cfo(A).
		2. Ligand: EDO × 2 1,2-Ethanediol PDB codes: 6lb4(A), 7a77(A).
		3. Ligand: SO4 × 1 Sulfate ion PDB code: 6a5y(D).

Cluster 6 contains 2 ligand types

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Ligand		Description
		1. Ligand: MES × 1 2-(N-Morpholino)-Ethanesulfonic acid PDB code: 4cn2(C).
_Cl		2. Metal: _CL × 1 PDB code: 4cn5(A).