Ligand clusters for UniProt code P19052

Ligand clusters for P19052: Photosystem II reaction center protein H (Fragment) from Thermosynechococcus vulcanus

		Top 6 (of 7) ligand clusters Cluster 1. 12 ligand types 264 ligands Cluster 2. 3 ligand types 55 ligands Cluster 3. 2 ligand types 2 ligands Cluster 4. 1 ligand type 1 ligand Cluster 5. 1 ligand type 5 ligands Cluster 6. 1 ligand type 1 ligand
Representative protein: 4ub6H

Structures

PDB		Schematic diagram
4ub6H
6jlnH
6jlkH
5ws6H
7couH
		more ...

Cluster 1 contains 12 ligand types

Use checkboxes to select ligands to display in RasMol, Jmol, or download as an SDF file. Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: BCR × 21 beta carotene Beta-Carotene PDB codes: 3a0b(H), 3a0h(H), 4il6(H), 4ub6(H), 4ub8(H), 5gth(H), 5gti(H), 5v2c(H), 5ws5(H), 5ws6(H), 6jlj(H), 6jlk(H), 6jll(H), 6jlm(H), 6jln(H), 6jlo(H), 6jlp(H), 7cji(H), 7cjj(H), 7cou(H), 7czl(H).
		2. Ligand: DMS × 2 dimethyl sulfoxide Dimethyl sulfoxide PDB codes: 5b5e(H), 5b66(H).
		3. Ligand: CLA × 140 Chlorophyll a PDB codes: 3a0b(H), 3a0h(H), 3wu2(H), 4il6(H), 4ub6(H), 4ub8(H), 5b5e(H), 5b66(H), 5gth(H), 5gti(H), 5v2c(H), 5ws5(H), 5ws6(H), 6jlj(H), 6jlk(H), 6jll(H), 6jlm(H), 6jln(H), 6jlo(H), 6jlp(H), 7cji(H), 7cjj(H), 7cou(H), 7czl(H), 7d1t(H), 7d1u(H),
		4. Ligand: DGD × 26 Digalactosyl diacyl glycerol (dgdg) PDB codes: 3a0b(H), 3a0h(H), 3wu2(H), 4il6(H), 4ub6(H), 4ub8(H), 5b5e(H), 5b66(H), 5gth(H), 5gti(H), 5v2c(H), 5ws5(H), 5ws6(H), 6jlj(H), 6jlk(H), 6jll(H), 6jlm(H), 6jln(H), 6jlo(H), 6jlp(H), 7cji(H), 7cjj(H), 7cou(H), 7czl(H), 7d1t(H), 7d1u(H).
		5. Ligand: HTG × 21 Heptyl 1-Thio-Beta-D-Glucopyranoside PDB codes: 3wu2(H), 4il6(H), 4ub6(H), 4ub8(H), 5b5e(H), 5b66(H), 5gth(H), 5gti(H), 5v2c(H), 5ws5(H), 5ws6(H), 6jlj(H), 6jlk(H), 6jll(H), 6jlm(H), 6jln(H), 6jlo(H), 6jlp(H), 7cji(H), 7cjj(H), 7cou(H).
		6. Ligand: LMT × 21 Dodecyl-Beta-D-Maltoside PDB codes: 3wu2(H), 4il6(H), 4ub6(H), 4ub8(H), 5b5e(H), 5b66(H), 5gth(H), 5gti(H), 5v2c(H), 5ws5(H), 5ws6(H), 6jlj(H), 6jlk(H), 6jll(H), 6jlm(H), 6jln(H), 6jlo(H), 6jlp(H), 7cji(H), 7cjj(H), 7cou(H).
		7. Ligand: UNL × 20 Unknown ligand PDB codes: 3wu2(H), 4il6(H), 4ub8(H), 5b5e(H), 5b66(H), 5ws6(H), 6jlj(H), 6jlk(H), 6jll(H), 6jlm(H), 6jln(H), 6jlo(H), 6jlp(H), 7d1t(H), 7d1u(H).
		8. Ligand: RRX × 5 (3r)-Beta,Beta-Caroten-3-Ol PDB codes: 3wu2(H), 5b5e(H), 5b66(H), 7d1t(H), 7d1u(H).
		9. Ligand: PG4 × 4 Tetraethylene glycol PDB codes: 5v2c(H),
		10. Ligand: EDO × 2 1,2-Ethanediol PDB codes: 5v2c(H),
		11. Ligand: LMG × 1 1,2-Distearoyl-Monogalactosyl-Diglyceride PDB code: 5v2c(H).
		12. Ligand: P6G × 1 Hexaethylene glycol PDB code: 5v2c(H).

Cluster 2 contains 3 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: CLA × 52 Chlorophyll a PDB codes: 3a0b(H), 3a0h(H), 3wu2(H), 4il6(H), 4ub6(H), 4ub8(H), 5b5e(H), 5b66(H), 5gth(H), 5gti(H), 5v2c(H), 5ws5(H), 5ws6(H), 6jlj(H), 6jlk(H), 6jll(H), 6jlm(H), 6jln(H), 6jlo(H), 6jlp(H), 7cji(H), 7cjj(H), 7cou(H), 7czl(H), 7d1t(H), 7d1u(H),
		2. Ligand: SQD × 2 1,2-Di-O-Acyl-3-O-[6-Deoxy-6-Sulfo-Alpha-D- Glucopyranosyl]-Sn-Glycerol PDB codes: 7czl(H), 7d1u(H).
		3. Ligand: PGE × 1 Triethylene glycol PDB code: 5v2c(H).

Cluster 3 contains 2 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: PGE × 1 Triethylene glycol PDB code: 5v2c(H).
		2. Ligand: UNL × 1 Unknown ligand PDB code: 5b66(H).

Cluster 4 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: PGE × 1 Triethylene glycol PDB code: 5v2c(H).

Cluster 5 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: GOL × 5 glycerin Glycerol PDB codes: 3wu2(H), 5v2c(H), 7cji(H), 7cjj(H), 7cou(H).

Cluster 6 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: DMS × 1 dimethyl sulfoxide Dimethyl sulfoxide PDB code: 5b5e(H).