Ligand clusters for UniProt code P16932

Ligand clusters for P16932: 2,2-dialkylglycine decarboxylase from Burkholderia cepacia

		3 ligand clusters Cluster 1. 11 ligand types 23 ligands Cluster 2. 6 ligand types 16 ligands Cluster 3. 2 ligand types 16 ligands
Representative protein: 1d7rA

Structures

PDB		Schematic diagram
1d7rA
1z3zA
1zobA
1m0pA
1zodA
		more ...

Cluster 1 contains 11 ligand types

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Ligand		Description
		1. Ligand: PLP × 7 pyridoxal phosphate Pyridoxal-5'-Phosphate PDB codes: 1dgd(A), 1dge(A), 1dka(A), 1z3z(A), 1zob(A), 1zod(A), 2dkb(A).
		2. Ligand: MES × 7 2-(N-Morpholino)-Ethanesulfonic acid PDB codes: 1dgd(A), 1dge(A), 1dka(A), 1z3z(A), 1zob(A), 1zod(A), 2dkb(A).
		3. Ligand: 5PA × 1 N-[3-Hydroxy-2-Methyl-5-Phosphonooxymethyl-Pyridin-4- Y-Lmethyl]-1-Amino- Cyclopropanecarboxylic acid PDB code: 1d7r(A).
		4. Ligand: NMA × 1 N-[3-Hydroxy-2-Methyl-5-Phosphonooxymethyl-Pyridin-4- Ylmethyl]-2-Methylalanine PDB code: 1d7v(A).
		5. Ligand: DCS × 1 D-[3-Hydroxy-2-Methyl-5-Phosphonooxymethyl-Pyridin-4- Ylmethyl]-N,O-Cycloserylamide PDB code: 1d7s(A).
		6. Ligand: LCS × 1 [5-Hydroxy-6-Methyl-4-({[(4e)-3-Oxo-1,2-Oxazolidin-4- Ylidene]amino}methyl)pyridin-3- Yl]methyl dihydrogen phosphate PDB code: 1d7u(A).
		7. Ligand: PMP × 1 4'-Deoxy-4'-Aminopyridoxal-5'-Phosphate PDB code: 1zc9(A).
		8. Ligand: HCP × 1 1-[((1e)-{3-Hydroxy-2-Methyl-5-[(Phosphonooxy) methyl]pyridin-4- Yl}methylene) amino]cyclopentylphosphonic acid PDB code: 1m0n(A).
		9. Ligand: MPM × 1 (1r)-1-[((1e)-{3-Hydroxy-2-Methyl-5-[(Phosphonooxy) methyl]pyridin-4-Yl}methylene)amino]-1- Methylpropylphosphonic acid PDB code: 1m0o(A).
		10. Ligand: ELP × 1 (1r)-1-[((1e)-{3-Hydroxy-2-Methyl-5-[(Phosphonooxy) methyl]pyridin-4-Yl}methylene)amino]-1- Phenylethylphosphonic acid PDB code: 1m0p(A).
		11. Ligand: EPC × 1 (1s)-1-[((1e)-{3-Hydroxy-2-Methyl-5-[(Phosphonooxy) methyl]pyridin-4- Yl}methylene)amino]ethylphosphonic acid PDB code: 1m0q(A).

Cluster 2 contains 6 ligand types

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Ligand		Description
__K		1. Metal: __K × 11 PDB codes: 1d7r(A), 1d7s(A), 1d7u(A), 1d7v(A), 1dka(A), 1m0n(A), 1m0o(A), 1m0p(A), 1m0q(A), 1z3z(A), 1zc9(A).
_Ca		2. Metal: _CA × 1 PDB code: 1zob(A).
_Cs		3. Metal: _CS × 1 PDB code: 1zod(A).
_Li		4. Metal: _LI × 1 PDB code: 1dgd(A).
_Na		5. Metal: _NA × 1 PDB code: 2dkb(A).
_Rb		6. Metal: _RB × 1 PDB code: 1dge(A).

Cluster 3 contains 2 ligand types

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Ligand		Description
_Na		1. Metal: _NA × 15 PDB codes: 1d7r(A), 1d7s(A), 1d7u(A), 1d7v(A), 1dgd(A), 1dka(A), 1m0n(A), 1m0o(A), 1m0p(A), 1m0q(A), 1z3z(A), 1zc9(A), 1zob(A), 1zod(A), 2dkb(A).
_Rb		2. Metal: _RB × 1 PDB code: 1dge(A).