Ligand clusters for UniProt code P14867

Ligand clusters for P14867: Gamma-aminobutyric acid receptor subunit alpha-1 from Homo sapiens

		Top 6 (of 7) ligand clusters Cluster 1. 5 ligand types 19 ligands Cluster 2. 5 ligand types 7 ligands Cluster 3. 2 ligand types 6 ligands Cluster 4. 3 ligand types 14 ligands Cluster 5. 2 ligand types 3 ligands Cluster 6. 1 ligand type 2 ligands
Representative protein: 6i53A

Structures

PDB		Schematic diagram
6i53A
6x3uB
6hukA
6x3zB
6x3sB
		more ...

Cluster 1 contains 5 ligand types

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Ligand		Description
		1. Ligand: NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN-MAN × 7 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose. PDB codes: 6x3t(B), 6x3u(B), 6x3v(B), 6x3w(B), 6x3x(B), 6x3z(B), 6x40(B).
		2. Ligand: NAG-NAG-BMA-MAN-MAN-MAN-MAN × 5 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose. PDB codes: 6huj(A), 6huk(A), 6huo(A), 6hup(A), 6i53(A).
		3. Ligand: NAG-NAG-BMA-MAN-MAN × 4 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose. PDB codes: 6d6u(B), 6huj(A), 6huk(A), 6huo(A).
		4. Ligand: NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN × 2 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose. PDB codes: 6d6t(B), 6d6u(B).
		5. Ligand: NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN × 1 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose. PDB code: 6x3s(B).

Cluster 2 contains 5 ligand types

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Ligand		Description
		1. Ligand: DZP × 2 diazepam 7-Chloro-1-Methyl-5-Phenyl-1,3-Dihydro-2h-1,4- Benzodiazepin-2-One PDB codes: 6hup(A), 6x3x(B).
		2. Ligand: PFL × 1 propofol 2,6-Bis(1-Methylethyl)phenol PDB code: 6x3t(B).
		3. Ligand: V8D × 1 etomidate Ethyl 1-[(1r)-1-Phenylethyl]-1h-Imidazole-5-Carboxylate PDB code: 6x3v(B).
		4. Ligand: Y01 × 2 Cholesterol hemisuccinate PDB codes: 6d6t(B),
		5. Ligand: POV × 1 (2s)-3-(Hexadecanoyloxy)-2-[(9z)-Octadec-9- Enoyloxy]propyl 2-(Trimethylammonio)ethyl phosphate PDB code: 6i53(A).

Cluster 3 contains 2 ligand types

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Ligand		Description
		1. Ligand: PIO × 5 [(2r)-2-Octanoyloxy-3-[Oxidanyl-[(1r,2r,3s,4r,5r,6s)-2, 3,6-Tris(oxidanyl)-4,5-Diphosphonooxy- Cyclohexyl]oxy- Phosphoryl]oxy-Propyl] octanoate PDB codes: 6huj(A), 6huk(A), 6huo(A), 6hup(A), 6i53(A).
		2. Ligand: Y01 × 1 Cholesterol hemisuccinate PDB code: 6d6t(B).

Cluster 4 contains 3 ligand types

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Ligand		Description
		1. Ligand: ABU × 12 gamma-aminobutyric acid Gamma-Amino-Butanoic acid PDB codes: 6d6t(B), 6d6u(B), 6huj(A), 6huo(A), 6hup(A), 6x3t(B), 6x3u(B), 6x3v(B), 6x3w(B), 6x3x(B), 6x3z(B), 6x40(B).
		2. Ligand: H0Z × 1 Bicuculline methochloride PDB code: 6huk(A).
		3. Ligand: J94 × 1 (5s)-6,6-Dimethyl-5-[(6r)-8-Oxo-6,8-Dihydrofuro[3,4- E][1,3]benzodioxol-6-Yl]-5,6,7,8- Tetrahydro[1, 3]dioxolo[4,5-G]isoquinolin-6-Ium PDB code: 6x3s(B).

Cluster 5 contains 2 ligand types

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Ligand		Description
		1. Ligand: UQA × 1 phenobarbital 5-Ethyl-5-Phenylpyrimidine-2,4,6(1h,3h,5h)-Trione PDB code: 6x3w(B).
		2. Ligand: Y01 × 2 Cholesterol hemisuccinate PDB codes: 6d6u(B),

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: Y01 × 2 Cholesterol hemisuccinate PDB codes: 6d6t(B), 6d6u(B).