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PDBsum entry 6d6t

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protein ligands Protein-protein interface(s) links
Transport protein PDB id
6d6t

 

 

 

 

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Contents
Protein chains
333 a.a.
333 a.a.
302 a.a.
106 a.a.
116 a.a.
Ligands
NAG-NAG-BMA ×2
NAG-NAG-BMA-MAN-
MAN-MAN-MAN-MAN
NAG-NAG-BMA-MAN-
MAN
NAG ×3
ABU ×2
Y01 ×12
FYP
PDB id:
6d6t
Name: Transport protein
Title: Human gaba-a receptor alpha1-beta2-gamma2 subtype in complex with gaba and flumazenil, conformation b
Structure: Gamma-aminobutyric acid receptor subunit beta-2,gamma- aminobutyric acid receptor subunit beta-2. Chain: a, c. Synonym: gaba(a) receptor subunit beta-2,gaba(a) receptor subunit beta-2. Engineered: yes. Gamma-aminobutyric acid receptor subunit alpha-1,gamma- aminobutyric acid receptor subunit alpha-1. Chain: b, d.
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: gabrb2. Expressed in: homo sapiens. Expression_system_taxid: 9606. Expression_system_variant: gnti-. Expression_system_cell_line: hek293. Expression_system_atcc_number: crl-3022.
Authors: S.Zhu,C.M.Noviello,J.Teng,R.M.Walsh Jr,J.J.Kim,R.E.Hibbs
Key ref: S.Zhu et al. (2018). Structure of a human synaptic GABAA receptor. Nature, 559, 67-72. PubMed id: 29950725 DOI: 10.1038/s41586-018-0255-3
Date:
22-Apr-18     Release date:   27-Jun-18    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chains
Pfam   ArchSchema ?
P47870  (GBRB2_HUMAN) -  Gamma-aminobutyric acid receptor subunit beta-2 from Homo sapiens
Seq:
Struc:
512 a.a.
333 a.a.*
Protein chains
Pfam   ArchSchema ?
P14867  (GBRA1_HUMAN) -  Gamma-aminobutyric acid receptor subunit alpha-1 from Homo sapiens
Seq:
Struc:
456 a.a.
333 a.a.*
Protein chain
Pfam   ArchSchema ?
P18507  (GBRG2_HUMAN) -  Gamma-aminobutyric acid receptor subunit gamma-2 from Homo sapiens
Seq:
Struc:
475 a.a.
302 a.a.*
Protein chains
No UniProt id for this chain
Struc: 106 a.a.
Protein chains
No UniProt id for this chain
Struc: 116 a.a.
Key:    PfamA domain  Secondary structure
* PDB and UniProt seqs differ at 77 residue positions (black crosses)

 

 
DOI no: 10.1038/s41586-018-0255-3 Nature 559:67-72 (2018)
PubMed id: 29950725  
 
 
Structure of a human synaptic GABAA receptor.
S.Zhu, C.M.Noviello, J.Teng, R.M.Walsh, J.J.Kim, R.E.Hibbs.
 
  ABSTRACT  
 
Fast inhibitory neurotransmission in the brain is principally mediated by the neurotransmitter GABA (γ-aminobutyric acid) and its synaptic target, the type A GABA receptor (GABAA receptor). Dysfunction of this receptor results in neurological disorders and mental illnesses including epilepsy, anxiety and insomnia. The GABAA receptor is also a prolific target for therapeutic, illicit and recreational drugs, including benzodiazepines, barbiturates, anaesthetics and ethanol. Here we present high-resolution cryo-electron microscopy structures of the human α1β2γ2 GABAA receptor, the predominant isoform in the adult brain, in complex with GABA and the benzodiazepine site antagonist flumazenil, the first-line clinical treatment for benzodiazepine overdose. The receptor architecture reveals unique heteromeric interactions for this important class of inhibitory neurotransmitter receptor. This work provides a template for understanding receptor modulation by GABA and benzodiazepines, and will assist rational approaches to therapeutic targeting of this receptor for neurological disorders and mental illness.
 

 

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