Ligand clusters for UniProt code P12312

Ligand clusters for P12312: Photosystem II reaction center protein M from Thermosynechococcus vulcanus

		4 ligand clusters Cluster 1. 8 ligand types 341 ligands Cluster 2. 7 ligand types 99 ligands Cluster 3. 1 ligand type 16 ligands Cluster 4. 1 ligand type 2 ligands
Representative protein: 3a0bM

Structures

PDB		Schematic diagram
3a0bM
7czlM
6jlnM
4ub6M
6jllM
		more ...

Cluster 1 contains 8 ligand types

Use checkboxes to select ligands to display in RasMol, Jmol, or download as an SDF file. Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: BCR × 27 beta carotene Beta-Carotene PDB codes: 3a0b(M), 3a0h(M), 3wu2(M), 5b5e(M), 5b66(M), 5gth(M), 5gti(M), 5v2c(M), 5ws5(M), 5ws6(M), 6jlm(M), 6jlo(M), 6jlp(M), 7cji(M), 7cjj(M), 7cou(M), 7czl(M), 7d1t(M), 7d1u(M).
		2. Ligand: GOL × 12 glycerin Glycerol PDB codes: 3wu2(M), 4ub6(M), 4ub8(M), 5v2c(M), 6jlj(M), 6jlk(M), 6jll(M), 6jlm(M), 6jln(M), 6jlo(M), 6jlp(M).
		3. Ligand: LMT × 107 Dodecyl-Beta-D-Maltoside PDB codes: 3wu2(M), 4il6(M), 4ub6(M), 4ub8(M), 5b5e(M), 5b66(M), 5gth(M), 5gti(M), 5v2c(M), 5ws5(M), 5ws6(M), 6jlj(M), 6jlk(M), 6jll(M), 6jlm(M), 6jln(M), 6jlo(M), 6jlp(M), 7cji(M), 7cjj(M), 7cou(M), 7czl(M), 7d1t(M), 7d1u(M).
		4. Ligand: CLA × 97 Chlorophyll a PDB codes: 3a0b(M), 3a0h(M), 3wu2(M), 4il6(M), 4ub6(M), 4ub8(M), 5b5e(M), 5b66(m), 5gth(M), 5gti(M), 5v2c(M), 5ws5(M), 5ws6(M), 6jlj(M), 6jlk(M), 6jll(M), 6jlm(M), 6jln(M), 6jlo(M), 6jlp(M), 7cji(M), 7cjj(M), 7cou(M), 7czl(M), 7d1t(M), 7d1u(M),
		5. Ligand: LHG × 58 1,2-Dipalmitoyl-Phosphatidyl-Glycerole PDB codes: 3wu2(M), 4il6(M), 4ub6(M), 4ub8(M), 5b5e(M), 5b66(M), 5gth(M), 5gti(M), 5v2c(M), 5ws5(M), 5ws6(M), 6jlj(M), 6jlk(M), 6jll(M), 6jlm(M), 6jln(M), 6jlo(M), 6jlp(M), 7cji(M), 7cjj(M), 7cou(M), 7d1t(M), 7d1u(M),
		6. Ligand: LMG × 33 1,2-Distearoyl-Monogalactosyl-Diglyceride PDB codes: 3wu2(M), 4il6(M), 4ub6(M), 4ub8(M), 5b5e(M), 5b66(M), 5gth(M), 5gti(M), 5v2c(M), 5ws5(M), 5ws6(M), 6jlj(M), 6jlk(M), 6jll(M), 6jlm(M), 6jln(M), 6jlo(M), 6jlp(M), 7cji(M), 7cjj(M), 7cou(M), 7d1t(M), 7d1u(M).
		7. Ligand: MGE × 5 (1s)-2-(Alpha-L-Allopyranosyloxy)-1-[(Tridecanoyloxy) methyl]ethyl palmitate PDB codes: 3a0b(M), 3a0h(M), 7czl(M),
		8. Ligand: UNL × 2 Unknown ligand PDB codes: 7d1t(M), 7d1u(M).

Cluster 2 contains 7 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 5v2c(m).
		2. Ligand: SQD × 34 1,2-Di-O-Acyl-3-O-[6-Deoxy-6-Sulfo-Alpha-D- Glucopyranosyl]-Sn-Glycerol PDB codes: 3wu2(M), 4il6(M), 4ub6(M), 4ub8(M), 5b5e(M), 5b66(M), 5gth(M), 5gti(M), 5v2c(M), 5ws5(M), 5ws6(M), 6jlj(M), 6jlk(M), 6jll(M), 6jlm(M), 6jln(M), 6jlo(M), 6jlp(M), 7cji(M), 7cjj(M), 7cou(M), 7czl(M), 7d1t(M), 7d1u(M).
		3. Ligand: LMT × 33 Dodecyl-Beta-D-Maltoside PDB codes: 3wu2(M), 4il6(M), 4ub6(M), 4ub8(M), 5b5e(M), 5b66(M), 5gth(M), 5gti(M), 5v2c(M), 5ws5(M), 5ws6(M), 6jlj(M), 6jlk(M), 6jll(M), 6jlm(M), 6jln(M), 6jlo(M), 6jlp(M), 7cji(M), 7cjj(M), 7cou(M), 7d1t(M), 7d1u(M).
		4. Ligand: UNL × 27 Unknown ligand PDB codes: 3wu2(m), 4ub6(M), 4ub8(M), 5b5e(M), 5b66(M), 5gth(m), 5gti(m), 5ws5(M), 5ws6(M), 6jlj(M), 6jlk(M), 6jll(M), 6jlm(M), 6jln(M), 6jlo(M), 6jlp(M), 7cji(M), 7cjj(M), 7cou(M), 7d1t(M), 7d1u(M).
		5. Ligand: CLA × 2 Chlorophyll a PDB codes: 3a0b(M), 3a0h(M).
		6. Ligand: MGE × 1 (1s)-2-(Alpha-L-Allopyranosyloxy)-1-[(Tridecanoyloxy) methyl]ethyl palmitate PDB code: 7czl(M).
		7. Ligand: PG4 × 1 Tetraethylene glycol PDB code: 5v2c(M).

Cluster 3 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: GOL × 16 glycerin Glycerol PDB codes: 3wu2(m), 4ub6(M), 4ub8(M), 5gth(m), 5gti(m), 5v2c(M), 5ws5(m), 5ws6(m), 6jlj(M), 6jlk(M), 6jll(M), 6jlm(M), 6jln(M), 6jlo(M), 6jlp(M).

Cluster 4 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: BCT × 2 Bicarbonate ion PDB codes: 5v2c(M),