Your browser does not support inline frames or is currently configured not to display inline frames. Content can be viewed at actual source page: inc/head.html
EBI
Databases
Structure Databases
PDBsum
Ligand clusters for UniProt code P0DTD1_10
Ligand clusters for P0DTD1_10: NSP10 - essential for NSP16 methyltransferase activity (138 aa)
Top 6 (of 11) ligand clusters
Cluster 1.
4 ligand types
10 ligands
Cluster 2.
2 ligand types
4 ligands
Cluster 3.
2 ligand types
4 ligands
Cluster 4.
2 ligand types
3 ligands
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
1 ligand type
1 ligand
Representative protein: 7diyA
Structures
PDB
Schematic diagram
7diy
A
7lw3
B
7lw4
B
6xkm
B
7jyy
B
more ...
Cluster 1 contains 4 ligand types
Use checkboxes to select ligands to display in RasMol, Jmol, or download as an SDF file.
Selection shortcuts:
select all/none
invert selection.
Ligand
Description
1. Ligand:
BDF × 3
Beta-D-Fructopyranose
PDB codes:
6w4h
(B),
7l6r
(B),
7l6t
(B).
2. Ligand:
EDO × 3
1,2-Ethanediol
PDB codes:
7lw3
(B),
7mc5
(M),
7mc6
(M).
3. Ligand:
SO4 × 3
Sulfate ion
PDB codes:
6wq3
(B),
6wrz
(B),
6wvn
(B).
4. Ligand:
ACT × 1
Acetate ion
PDB code:
7lw4
(B).
Cluster 2 contains 2 ligand types
Selection shortcuts:
select all/none
invert selection.
Ligand
Description
1. Ligand:
GOL × 1
glycerin
Glycerol
PDB code:
6zpe
(A).
2. Ligand:
EDO × 3
1,2-Ethanediol
PDB codes:
6w61
(B),
7mc5
(M),
Cluster 3 contains 2 ligand types
Selection shortcuts:
select all/none
invert selection.
Ligand
Description
1. Ligand:
SO4 × 3
Sulfate ion
PDB codes:
6wq3
(B),
6wrz
(B),
6wvn
(B).
2. Ligand:
EDO × 1
1,2-Ethanediol
PDB code:
7mc5
(M).
Cluster 4 contains 2 ligand types
Selection shortcuts:
select all/none
invert selection.
Ligand
Description
1. Ligand:
SO4 × 2
Sulfate ion
PDB codes:
6wq3
(B),
6wrz
(B).
2. Ligand:
EDO × 1
1,2-Ethanediol
PDB code:
7mc5
(M).
Cluster 5 contains 1 ligand type
Selection shortcuts:
select all/none
invert selection.
Ligand
Description
1. Ligand:
EDO × 1
1,2-Ethanediol
PDB code:
7mc5
(M).
Cluster 6 contains 1 ligand type
Selection shortcuts:
select all/none
invert selection.
Ligand
Description
1. Ligand:
EDO × 1
1,2-Ethanediol
PDB code:
7mc5
(M).