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Ligand clusters for UniProt code P0A108

Ligand clusters for P0A108: 1,2-dihydroxynaphthalene dioxygenase OS=Pseudomonas sp. (strain C18) GN=doxG PE=1 SV=1

Top 6 (of 8) ligand clusters
Cluster 1.
6 ligand types
13 ligands
Cluster 2.
3 ligand types
3 ligands
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
2 ligand types
5 ligands
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
1 ligand type
1 ligand
Representative protein: 2ehzA  
JSmol
 

Structures

PDB   Schematic diagram
2ehzA    
2ei3A    
2ei2A    
2ei1A    
2ei0A    

 

 Cluster 1 contains 6 ligand types

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Ligand Description

Fe2
 
1. Metal: FE2 × 5
PDB codes: 2ehz(A), 2ei0(A), 2ei1(A), 2ei2(A), 2ei3(A).


 
2. Ligand: BP7 × 2
1,1'-Biphenyl-3,4-Diol
PDB codes: 2ei0(A),


 
3. Ligand: GOL × 2
Glycerol
PDB codes: 2ei2(A), 2ei3(A).


 
4. Ligand: MCT × 2
4-Methylcatechol
PDB codes: 2ehz(A),


 
5. Ligand: BPY × 1
Biphenyl-2,3-Diol
PDB code: 2ei3(A).


 
6. Ligand: D1N × 1
Naphthalene-1,2-Diol
PDB code: 2ei1(A).

 

 Cluster 2 contains 3 ligand types

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Ligand Description


 
1. Ligand: BP7 × 1
1,1'-Biphenyl-3,4-Diol
PDB code: 2ei0(A).


 
2. Ligand: BPY × 1
Biphenyl-2,3-Diol
PDB code: 2ei3(A).


 
3. Ligand: MCT × 1
4-Methylcatechol
PDB code: 2ehz(A).

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: BPY × 1
Biphenyl-2,3-Diol
PDB code: 2ei3(A).

 

 Cluster 4 contains 2 ligand types

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Ligand Description


 
1. Ligand: GOL × 4
Glycerol
PDB codes: 2ei0(A), 2ei1(A), 2ei2(A), 2ei3(A).


 
2. Ligand: EDO × 1
1,2-Ethanediol
PDB code: 2ehz(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description


 
1. Ligand: MCT × 1
4-Methylcatechol
PDB code: 2ehz(A).

 

 Cluster 6 contains 1 ligand type

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Ligand Description


 
1. Ligand: MCT × 1
4-Methylcatechol
PDB code: 2ehz(A).

 

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