EBI Databases Structure Databases PDBsum

Ligand clusters for UniProt code P09955

Ligand clusters for P09955: Carboxypeptidase B OS=Sus scrofa OX=9823 GN=CPB1 PE=1 SV=5

Top 6 (of 19) ligand clusters


Cluster 1. 38 ligand types 86 ligands		Cluster 2. 1 ligand type 1 ligand		Cluster 3. 1 ligand type 1 ligand		Cluster 4. 2 ligand types 3 ligands		Cluster 5. 1 ligand type 2 ligands		Cluster 6. 1 ligand type 1 ligand

Representative protein: 1nsaA

Structures

PDB		Schematic diagram

1nsaA
1zg7A
1zg9A
4uiaA
5lrkA
		more ...

Cluster 1 contains 38 ligand types (of which only 20 are listed. Click for all)

Use checkboxes to select ligands to display in RasMol, Jmol, or download as an SDF file.
Selection shortcuts: select all/none invert selection.

Ligand

Description

_Zn

1. Metal: _ZN × 46

PDB codes: 1nsa(A), 1z5r(A), 1zg7(A), 1zg8(A), 1zg9(A), 2jew(A), 2piy(A), 2piz(A), 2pj0(A), 2pj1(A), 2pj2(A), 2pj3(A), 2pj4(A), 2pj5(A), 2pj6(A), 2pj7(A), 2pj8(A), 2pj9(A), 2pja(A), 2pjb(A), 2pjc(A), 3glj(A), 3wab(A), 3wc5(A), 3wc6(A), 3wc7(A), 4uia(A), 4uib(A), 4z65(A), 5j1q(A), 5jc6(A), 5lrg(A), 5lrj(A), 5lrk(A), 5lyd(A), 5lyf(A), 5lyi(A), 5lyl(A), 5zeq(A),

2. Ligand: CAC × 3

Cacodylate ion

PDB codes: 3wab(A), 3wc5(A), 5zeq(A).

3. Ligand: ACT × 2

Acetate ion

PDB codes: 3wc6(A), 5jc6(A).

4. Ligand: 059 × 1

(2s)-2-[3-(Aminomethyl)phenyl]-3-{(S)-Hydroxy[(1r)-2- Methyl-1-{[(2-
Phenylethyl) sulfonyl]amino}propyl]phosphoryl}propanoic acid

PDB code: 2pj6(A).

5. Ligand: 0X9 × 1

N~2~-Sulfamoyl-L-Arginine

PDB code: 4z65(A).

6. Ligand: 11B × 1

(5r,6s,8s)-8-(3-{[Amino(imino)methyl]amino}phenyl)-6- Hydroxy-3-Oxo-5-Pentyl-1-Phenyl-2,7-Dioxa-4-
Aza-6- Phosphanonan-9-Oic acid 6-Oxide

PDB code: 2pj5(A).

7. Ligand: 17A × 1

(2s)-2-[3-(Aminomethyl)phenyl]-3-[(R)-{(1r)-1- [(Biphenyl-4-Ylsulfonyl)amino]-2-
Methylpropyl}(hydroxy)phosphoryl]propanoic acid

PDB code: 2pj8(A).

8. Ligand: 235 × 1

(2s)-2-[3-(Aminomethyl)phenyl]-3-[(R)-Hydroxy{(1r)-2- Methyl-1-
[(Phenylsulfonyl) amino]propyl}phosphoryl]propanoic acid

PDB code: 2pj7(A).

9. Ligand: 281 × 1

(2s)-2-[3-(Aminomethyl)phenyl]-3-[(S)-{(1r)-1-[(2,1,3- Benzothiadiazol-4-Ylsulfonyl)amino]-2-
Methylpropyl}(hydroxy)phosphoryl]propanoic acid

PDB code: 2pj9(A).

10. Ligand: 33Z × 1

(2s)-2-(3-{[Amino(imino)methyl]amino}phenyl)-3-[(R)- [(1r)-1-({N-[(Benzyloxy)carbonyl]-L-
Phenylalanyl}amino)-2-Methylpropyl](hydroxy) phosphoryl]propanoic acid

PDB code: 2pja(A).

11. Ligand: 343 × 1

(2s)-(3-{[Amino(imino)methyl]amino}phenyl){[(s)-[(1r)- 1-({N-[(Benzyloxy)carbonyl]-L-
Tyrosyl}amino)-2- Methylpropyl](hydroxy)phosphoryl]oxy}acetic acid

PDB code: 2pjc(A).

12. Ligand: 414 × 1

(5r,6r,8s)-8-(3-{[Amino(imino)methyl]amino}phenyl)-5- Cyclohexyl-6-Hydroxy-3-Oxo-1-Phenyl-2,7-
Dioxa-4-Aza-6- Phosphanonan-9-Oic acid 6-Oxide

PDB code: 2pj4(A).

13. Ligand: 528 × 1

(2s)-2-[3-(Aminomethyl)phenyl]-3-{(R)-Hydroxy[(1r)-2- Methyl-1-{[(3-
Phenylpropyl) sulfonyl]amino}propyl]phosphoryl}propanoic acid

PDB code: 2piy(A).

14. Ligand: 578 × 1

(5r,6s,8s)-8-[3-(Aminomethyl)phenyl]-6-Hydroxy-5- Isopropyl-3-Oxo-1-Phenyl-2,7-Dioxa-4-Aza-6-
Phosphanonan-9-Oic acid 6-Oxide

PDB code: 2pj1(A).

15. Ligand: 606 × 1

(2s)-2-(3-{[Amino(imino)methyl]amino}phenyl)-3-[(S)- Hydroxy(3-
Phenylpropyl)phosphoryl]propanoic acid

PDB code: 2piz(A).

16. Ligand: 720 × 1

(2s)-5-Amino-2-[(1-Propyl-1h-Imidazol-4-Yl) methyl]pentanoic acid

PDB code: 2jew(A).

17. Ligand: 73N-DLY-IIL-73O-MAA-PHE × 1

73N=(2~{s})-5-Carbamimidamido-2-(Carboxyamino)pentanoic acid, DLY=D-Lysine, IIL=Iso-Isoleucine, 73O=(2~{s})-2-Azanyl-4-(4-Hydroxyphenyl)butanoic acid, MAA=N-Methyl-L-Alanine.

PDB code: 5lrk(A).

18. Ligand: 73N-DLY-VAL-73O-MAA-PHE × 1

73N=(2~{s})-5-Carbamimidamido-2-(Carboxyamino)pentanoic acid, DLY=D-Lysine, 73O=(2~{s})-2-Azanyl-4-(4-Hydroxyphenyl)butanoic acid, MAA=N-Methyl-L-Alanine.

PDB code: 5lrg(A).

19. Ligand: 73P-DLY-VAL-73O-MAA-PHE × 1

73P=(2~{s})-6-Azanyl-2-(Carboxyamino)hexanoic acid, DLY=D-Lysine, 73O=(2~{s})-2-Azanyl-4-(4-Hydroxyphenyl)butanoic acid, MAA=N-Methyl-L-Alanine.

PDB code: 5lrj(A).