Ligand clusters for UniProt code P08164

Ligand clusters for P08164: NH(3)-dependent NAD(+) synthetase OS=Bacillus subtilis (strain 168) GN=nadE PE=1 SV=5

		Top 6 (of 7) ligand clusters Cluster 1. 8 ligand types 23 ligands Cluster 2. 4 ligand types 6 ligands Cluster 3. 2 ligand types 2 ligands Cluster 4. 2 ligand types 2 ligands Cluster 5. 1 ligand type 2 ligands Cluster 6. 1 ligand type 1 ligand
Representative protein: 1ee1A

Structures

PDB		Schematic diagram
1ee1A
1fydA
1nsyA
1ifxA
1kqpA
		more ...

Cluster 1 contains 8 ligand types

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Ligand		Description
		1. Ligand: POP × 4 Pyrophosphate 2- PDB codes: 1fyd(A), 1kqp(A), 1nsy(A), 2nsy(A).
		2. Ligand: DND × 3 Nicotinic acid adenine dinucleotide PDB codes: 1ee1(A), 1ifx(A).
		3. Ligand: AMP × 2 Adenosine monophosphate PDB codes: 1fyd(A), 1nsy(A).
		4. Ligand: ATP × 2 adenosine triphosphate Adenosine-5'-Triphosphate PDB codes: 1ee1(A), 1nsy(A).
		5. Ligand: APC × 1 Diphosphomethylphosphonic acid adenosyl ester PDB code: 1ih8(A).
		6. Ligand: ADJ × 1 Nicotinamide-Adenine-Dinucleotide-Adenylate intermediate PDB code: 1kqp(A).
_Mg		7. Metal: _MG × 9 PDB codes: 1ee1(A), 1fyd(A), 1ih8(A), 1kqp(A), 1nsy(A), 2nsy(A),
		8. Ligand: AMP-NAD × 1 AMP=Adenosine monophosphate, NAD=Nicotinamide-Adenine-Dinucleotide. PDB code: 2nsy(A).

Cluster 2 contains 4 ligand types

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Ligand		Description
		1. Ligand: DND × 3 Nicotinic acid adenine dinucleotide PDB codes: 1ee1(A), 1ifx(A).
		2. Ligand: ATP × 1 adenosine triphosphate Adenosine-5'-Triphosphate PDB code: 1nsy(A).
		3. Ligand: ADJ × 1 Nicotinamide-Adenine-Dinucleotide-Adenylate intermediate PDB code: 1kqp(A).
		4. Ligand: AMP-NAD × 1 AMP=Adenosine monophosphate, NAD=Nicotinamide-Adenine-Dinucleotide. PDB code: 2nsy(A).

Cluster 3 contains 2 ligand types

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Ligand		Description
		1. Ligand: GOL × 1 Glycerol PDB code: 2nsy(A).
		2. Ligand: EDO × 1 1,2-Ethanediol PDB code: 1kqp(A).

Cluster 4 contains 2 ligand types

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Ligand		Description
		1. Ligand: GOL × 1 Glycerol PDB code: 2nsy(A).
		2. Ligand: EDO × 1 1,2-Ethanediol PDB code: 1kqp(A).

Cluster 5 contains 1 ligand type

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Ligand		Description
		1. Ligand: EDO × 2 1,2-Ethanediol PDB codes: 1kqp(A),

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: EDO × 1 1,2-Ethanediol PDB code: 1kqp(A).