spacer
spacer
EBI Databases Structure Databases PDBsum

Ligand clusters for UniProt code P07471

Ligand clusters for P07471: Cytochrome c oxidase subunit 6A2, mitochondrial from Bos taurus

6 ligand clusters
Cluster 1.
11 ligand types
225 ligands
 Cluster 2.
4 ligand types
75 ligands
 Cluster 3.
1 ligand type
14 ligands
 Cluster 4.
1 ligand type
3 ligands
 Cluster 5.
1 ligand type
6 ligands
 Cluster 6.
1 ligand type
1 ligand
Representative protein: 1v54G  
JSmol
 

Structures

PDB   Schematic diagram
1v54G    
2dysG    
2eikG    
2eimG    
2einG    
 more ...

 

 Cluster 1 contains 11 ligand types

Use checkboxes to select ligands to display in RasMol, Jmol, or download as an SDF file.
Selection shortcuts: select all/none invert selection.
Ligand Description


 
1. Ligand: CHD × 45
cholic acid
Cholic acid
PDB codes: 1v54(G), 1v55(G), 2dyr(G), 2dys(G), 2eij(G), 2eik(G), 2eil(G), 2eim(G), 2ein(G), 2y69(G), 2zxw(G), 3abk(G), 3abl(G), 3abm(G), 3ag1(G), 3ag2(G), 3ag3(G), 3ag4(G), 3asn(G), 3aso(G), 3wg7(G), 3x2q(G), 5b1a(G), 5b1b(G), 5b3s(G), 5iy5(G), 5w97(G), 5wau(G), 5x19(G), 5x1b(G), 5x1f(G), 5xdq(G), 5xdx(G), 5z84(G), 5z85(G), 5z86(G), 5zco(G), 5zcp(G), 5zcq(G), 6j8m(G), 6juw(G), 6nkn(G), 6nmf(G), 6nmp(G), 7coh(G).


 
2. Ligand: PEK × 18
(1s)-2-{[(2-Aminoethoxy)(hydroxy)phosphoryl]oxy}-1- [(Stearoyloxy)methyl]ethyl (5e,8e,11e,14e)-
Icosa-5,8, 11,14-Tetraenoate
PDB codes: 1v54(G), 1v55(G), 2dyr(G), 2dys(G), 2eij(G), 2eik(G), 2eil(G), 2eim(G), 2ein(G),


 
3. Ligand: PGV × 4
(1r)-2-{[{[(2s)-2,3-Dihydroxypropyl]oxy}(hydroxy) phosphoryl]oxy}-1-
[(Palmitoyloxy)methyl]ethyl (11e)- Octadec-11-Enoate
PDB codes: 1v55(G), 2dyr(G), 2eij(G), 2ein(G).


 
4. Ligand: CDL × 9
Cardiolipin
PDB codes: 1v54(G), 1v55(G), 2dyr(G), 2dys(G), 2eij(G), 2eik(G), 2eil(G), 2eim(G), 2ein(G).


 
5. Ligand: PEK × 66
(1s)-2-{[(2-Aminoethoxy)(hydroxy)phosphoryl]oxy}-1- [(Stearoyloxy)methyl]ethyl (5e,8e,11e,14e)-
Icosa-5,8, 11,14-Tetraenoate
PDB codes: 2zxw(G), 3abk(G), 3abl(G), 3abm(G), 3ag1(G), 3ag2(G), 3ag3(G), 3ag4(G), 3asn(G), 3aso(G), 3wg7(G), 3x2q(G), 5b1a(G), 5b1b(G), 5b3s(G), 5w97(G), 5wau(G), 5x19(G), 5x1b(G), 5x1f(G), 5xdq(G), 5xdx(G), 5z84(G), 5z85(G), 5z86(G), 5zco(G), 5zcp(G), 5zcq(G), 6j8m(G), 6juw(G), 6nkn(G), 6nmf(G), 6nmp(G),


 
6. Ligand: CDL × 34
Cardiolipin
PDB codes: 2zxw(G), 3abk(G), 3abl(G), 3abm(G), 3ag1(G), 3ag2(G), 3ag3(G), 3ag4(G), 3asn(G), 3aso(G), 3wg7(G), 3x2q(G), 5b1a(G), 5b1b(G), 5b3s(G), 5iy5(G), 5w97(G), 5wau(G), 5x19(G), 5x1b(G), 5x1f(G), 5xdq(G), 5xdx(G), 5z84(G), 5z85(G), 5z86(G), 5zco(G), 5zcp(G), 5zcq(G), 6j8m(G), 6juw(G), 6nkn(G), 6nmf(G), 6nmp(G).


 
7. Ligand: PGV × 28
(1r)-2-{[{[(2s)-2,3-Dihydroxypropyl]oxy}(hydroxy) phosphoryl]oxy}-1-
[(Palmitoyloxy)methyl]ethyl (11e)- Octadec-11-Enoate
PDB codes: 2zxw(G), 3abl(G), 3abm(G), 3ag1(G), 3ag2(G), 3ag4(G), 3asn(G), 3aso(G), 3wg7(G), 3x2q(G), 5b1a(G), 5b1b(G), 5b3s(G), 5w97(G), 5wau(G), 5x1b(G), 5xdq(G), 5xdx(G), 5z84(G), 5z85(G), 5z86(G), 5zco(G), 5zcp(G), 5zcq(G), 6j8m(G), 6juw(G), 6nkn(G), 6nmf(G).


 
8. Ligand: EDO × 12
1,2-Ethanediol
PDB codes: 5b3s(G), 5x19(G), 5x1f(G), 5xdq(G), 5z84(G), 5z85(G), 5z86(G), 6juw(G), 7coh(G).


 
9. Ligand: LFA × 5
Eicosane
PDB codes: 7coh(G),


 
10. Ligand: DMU × 3
Decyl-Beta-D-Maltopyranoside
PDB codes: 7coh(G),


 
11. Ligand: UNL × 1
Unknown ligand
PDB code: 5iy5(G).

 

 Cluster 2 contains 4 ligand types

Selection shortcuts: select all/none invert selection.
Ligand Description


 
1. Ligand: DMU × 7
Decyl-Beta-D-Maltopyranoside
PDB codes: 2dyr(G), 2dys(G), 2eij(G), 2eik(G), 2eil(G), 2eim(G), 2ein(G).


 
2. Ligand: PEK × 47
(1s)-2-{[(2-Aminoethoxy)(hydroxy)phosphoryl]oxy}-1- [(Stearoyloxy)methyl]ethyl (5e,8e,11e,14e)-
Icosa-5,8, 11,14-Tetraenoate
PDB codes: 1v54(G), 1v55(G), 2dyr(G), 2dys(G), 2eij(G), 2eik(G), 2eil(G), 2eim(G), 2ein(G), 2y69(G), 2zxw(G), 3abk(G), 3abl(G), 3abm(G), 3ag1(G), 3ag2(G), 3ag3(G), 3ag4(G), 3asn(G), 3aso(G), 3wg7(G), 3x2q(G), 5b1a(G), 5b1b(G), 5b3s(G), 5iy5(G), 5w97(G), 5wau(G), 5x19(G), 5x1b(G), 5x1f(G), 5xdq(G), 5xdx(G), 5z84(G), 5z85(G), 5z86(G), 5zco(G), 5zcp(G), 5zcq(G), 6j8m(G), 6juw(G), 6jy3(G), 6jy4(G), 6nkn(G), 6nmf(G), 6nmp(G), 7coh(G).


 
3. Ligand: DMU × 15
Decyl-Beta-D-Maltopyranoside
PDB codes: 2zxw(G), 3abk(G), 3abl(G), 3abm(G), 3ag1(G), 3ag2(G), 3ag3(G), 3ag4(G), 3x2q(G), 5b3s(G), 5w97(G), 5wau(G), 6juw(G), 6nkn(G), 6nmp(G).


 
4. Ligand: CQX × 6
(2s,3s,4s,5s,6r)-2-(2-Decoxyethoxy)-6-(Hydroxymethyl) oxane-3,4,5-Triol
PDB codes: 6jy3(G), 6jy4(G),

 

 Cluster 3 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand Description


 
1. Ligand: EDO × 14
1,2-Ethanediol
PDB codes: 5b3s(G), 5iy5(G), 5x19(G), 5x1b(G), 5x1f(G), 5xdq(G), 5z84(G), 5z85(G), 5z86(G), 5zco(G), 5zcp(G), 5zcq(G), 6juw(G), 7coh(G).

 

 Cluster 4 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand Description


 
1. Ligand: EDO × 3
1,2-Ethanediol
PDB codes: 5z84(G), 5z85(G), 5z86(G).

 

 Cluster 5 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand Description


 
1. Ligand: EDO × 6
1,2-Ethanediol
PDB codes: 5z84(G), 5z85(G), 5z86(G), 5zco(G), 5zcp(G), 5zcq(G).

 

 Cluster 6 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand Description

_Zn
 
1. Metal: _ZN × 1
PDB code: 2ein(G).

 

spacer
spacer