Ligand clusters for UniProt code P06737

Ligand clusters for P06737: Glycogen phosphorylase, liver form OS=Homo sapiens GN=PYGL PE=1 SV=4

		Top 6 (of 12) ligand clusters Cluster 1. 14 ligand types 15 ligands Cluster 2. 11 ligand types 16 ligands Cluster 3. 4 ligand types 14 ligands Cluster 4. 3 ligand types 7 ligands Cluster 5. 5 ligand types 35 ligands Cluster 6. 1 ligand type 2 ligands
Representative protein: 1fa9A

Structures

PDB		Schematic diagram
1fa9A
3cejA
1fc0A
2zb2A
3cemA
		more ...

Cluster 1 contains 14 ligand types

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Ligand		Description
		1. Ligand: MPD × 1 (4s)-2-Methyl-2,4-Pentanediol PDB code: 1exv(A).
		2. Ligand: MRD × 2 (4r)-2-Methylpentane-2,4-Diol PDB codes: 1l5s(A), 1l7x(A).
		3. Ligand: AMP × 1 Adenosine monophosphate PDB code: 1fa9(A).
		4. Ligand: IHU × 1 N-(2-Chloro-4-Fluorobenzoyl)-N'-(5-Hydroxy-2- Methoxyphenyl)urea PDB code: 2ati(A).
		5. Ligand: MPD × 1 (4s)-2-Methyl-2,4-Pentanediol PDB code: 2zb2(A).
		6. Ligand: 055 × 1 (2s)-{[(3-{[(2-Chloro-6-Methylphenyl) carbamoyl]amino}naphthalen-2- Yl) carbonyl]amino}(phenyl)ethanoic acid PDB code: 3ddw(A).
		7. Ligand: 25D × 1 2-Cyclohexyl-N-[(3-{[(2,4,6-Trimethylphenyl) carbamoyl]amino}naphthalen-2-Yl)carbonyl]-D-Alanine PDB code: 3dd1(A).
		8. Ligand: 26B × 1 O-Tert-Butyl-N-[(3-{[(2,4,6-Trimethylphenyl) carbamoyl]amino}naphthalen-2-Yl)carbonyl]-L-Threonine PDB code: 3dds(A).
		9. Ligand: AVD × 1 1-(2-Carboxyphenyl)-7-Chloro-6-[(2-Chloro-4,6- Difluorophenyl)amino]-4-Oxo-1,4-Dihydroquinoline-3- Carboxylic acid PDB code: 3cem(A).
		10. Ligand: AVE × 1 4-[3-(2-Chloro-4,5-Difluoro-Benzoyl)ureido]-3- Trifluoromethoxybenzoic acid PDB code: 3ceh(A).
		11. Ligand: AVF × 1 1-{2-[3-(2-Chloro-4,5-Difluoro-Benzoyl)-Ureido]-4- Fluoro-Phenyl}-Piperidine-4-Carboxylic acid PDB code: 3cej(A).
		12. Ligand: GLY-PRO-TYR-TYR × 1 PDB code: 2qll(A).
		13. Ligand: MES × 1 2-(N-Morpholino)-Ethanesulfonic acid PDB code: 2zb2(A).
		14. Ligand: PO4 × 1 Phosphate ion PDB code: 3ceh(A).

Cluster 2 contains 11 ligand types

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Ligand		Description
		1. Ligand: MRD × 5 (4r)-2-Methylpentane-2,4-Diol PDB codes: 1l5r(A), 1l5s(A), 1l7x(A),
		2. Ligand: MPD × 2 (4s)-2-Methyl-2,4-Pentanediol PDB codes: 1em6(A), 1exv(A).
		3. Ligand: IHU × 1 N-(2-Chloro-4-Fluorobenzoyl)-N'-(5-Hydroxy-2- Methoxyphenyl)urea PDB code: 2ati(A).
		4. Ligand: MPD × 1 (4s)-2-Methyl-2,4-Pentanediol PDB code: 2zb2(A).
		5. Ligand: 055 × 1 (2s)-{[(3-{[(2-Chloro-6-Methylphenyl) carbamoyl]amino}naphthalen-2- Yl) carbonyl]amino}(phenyl)ethanoic acid PDB code: 3ddw(A).
		6. Ligand: 25D × 1 2-Cyclohexyl-N-[(3-{[(2,4,6-Trimethylphenyl) carbamoyl]amino}naphthalen-2-Yl)carbonyl]-D-Alanine PDB code: 3dd1(A).
		7. Ligand: 26B × 1 O-Tert-Butyl-N-[(3-{[(2,4,6-Trimethylphenyl) carbamoyl]amino}naphthalen-2-Yl)carbonyl]-L-Threonine PDB code: 3dds(A).
		8. Ligand: AVD × 1 1-(2-Carboxyphenyl)-7-Chloro-6-[(2-Chloro-4,6- Difluorophenyl)amino]-4-Oxo-1,4-Dihydroquinoline-3- Carboxylic acid PDB code: 3cem(A).
		9. Ligand: AVE × 1 4-[3-(2-Chloro-4,5-Difluoro-Benzoyl)ureido]-3- Trifluoromethoxybenzoic acid PDB code: 3ceh(A).
		10. Ligand: AVF × 1 1-{2-[3-(2-Chloro-4,5-Difluoro-Benzoyl)-Ureido]-4- Fluoro-Phenyl}-Piperidine-4-Carboxylic acid PDB code: 3cej(A).
		11. Ligand: MES × 1 2-(N-Morpholino)-Ethanesulfonic acid PDB code: 2zb2(A).

Cluster 3 contains 4 ligand types

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Ligand		Description
		1. Ligand: CP4 × 1 Bis[5-Chloro-1h-Indol-2-Yl-Carbonyl-Aminoethyl]- Ethylene glycol PDB code: 1em6(A).
		2. Ligand: 288 × 2 5-Chloro-1h-Indole-2-Carboxylic acid{[cyclopentyl-(2- Hydroxy-Ethyl)-Carbamoyl]-Methyl}-Amide PDB codes: 1xoi(A),
		3. Ligand: 700 × 9 [5-Chloro-1h-Indol-2-Carbonyl-Phenylalaninyl]- Azetidine-3-Carboxylic acid PDB codes: 1exv(A), 1l5q(A), 1l5r(A), 1l5s(A), 1l7x(A),
		4. Ligand: A46 × 2 5-Chloro-N-{4-[(1r)-1,2-Dihydroxyethyl]phenyl}-1h- Indole-2-Carboxamide PDB codes: 2zb2(A),

Cluster 4 contains 3 ligand types

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Ligand		Description
		1. Ligand: CFF × 5 caffeine Caffeine PDB codes: 1l5q(A), 1l7x(A), 3dd1(A), 3dds(A), 3ddw(A).
		2. Ligand: RBF × 1 riboflavin Riboflavin PDB code: 1l5r(A).
		3. Ligand: URC × 1 Uric acid PDB code: 1l5s(A).

Cluster 5 contains 5 ligand types

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Ligand		Description
		1. Ligand: GLC × 2 Alpha-D-Glucose PDB codes: 1fa9(A), 2ati(A).
		2. Ligand: NBG × 8 1-N-Acetyl-Beta-D-Glucosamine PDB codes: 1em6(A), 1exv(A), 1fc0(A), 1l5q(A), 1l5r(A), 1l5s(A), 1l7x(A), 1xoi(A).
		3. Ligand: PLP × 18 Pyridoxal-5'-Phosphate PDB codes: 1em6(A), 1exv(A), 1fa9(A), 1fc0(A), 1l5q(A), 1l5r(A), 1l5s(A), 1l7x(A), 1xoi(A), 2ati(A), 2qll(A), 2zb2(A), 3ceh(A), 3cej(A), 3cem(A), 3dd1(A), 3dds(A), 3ddw(A).
		4. Ligand: NBG × 6 1-N-Acetyl-Beta-D-Glucosamine PDB codes: 3ceh(A), 3cej(A), 3cem(A), 3dd1(A), 3dds(A), 3ddw(A).
		5. Ligand: GLC × 1 Alpha-D-Glucose PDB code: 2zb2(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: CFF × 2 caffeine Caffeine PDB codes: 1l5q(A), 1l7x(A).