Ligand clusters for UniProt code P06010

Ligand clusters for P06010: Reaction center protein M chain from Blastochloris viridis

		Top 6 (of 22) ligand clusters Cluster 1. 17 ligand types 472 ligands Cluster 2. 2 ligand types 34 ligands Cluster 3. 3 ligand types 5 ligands Cluster 4. 4 ligand types 42 ligands Cluster 5. 3 ligand types 49 ligands Cluster 6. 2 ligand types 13 ligands
Representative protein: 1dxrM

Structures

PDB		Schematic diagram
1dxrM
1r2cM
3g7fM
1vrnM
2i5nM
		more ...

Cluster 1 contains 17 ligand types

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 3t6e(M).
		2. Ligand: BCB × 119 Bacteriochlorophyll b PDB codes: 1dxr(M), 1prc(M), 1r2c(M), 1vrn(M), 2i5n(M), 2jbl(M), 2prc(M), 2wjm(M), 2wjn(M), 2x5u(M), 2x5v(M), 3d38(M), 3g7f(M), 3prc(M), 3t6e(M), 4ac5(M), 5nj4(M), 5o4c(M), 5o64(M), 5prc(M), 6et5(M), 6prc(M), 6zhw(M), 6zi4(M), 6zi5(M), 6zi6(M), 6zi9(M), 6zia(M), 6zid(M), 7prc(M),
		3. Ligand: LDA × 87 Lauryl dimethylamine-N-Oxide PDB codes: 1dxr(M), 1prc(M), 1r2c(M), 1vrn(M), 2i5n(M), 2jbl(M), 2prc(M), 3d38(M), 3g7f(M), 3prc(M), 3t6e(M), 5nj4(M), 5o4c(M), 5o64(M), 5prc(M), 6et5(M), 6prc(M), 6zhw(M), 6zi4(M), 6zi5(M), 6zi6(M), 6zi9(M), 6zia(M), 6zid(M), 7prc(M),
		4. Ligand: SO4 × 80 Sulfate ion PDB codes: 1dxr(M), 1prc(M), 1r2c(M), 1vrn(M), 2i5n(M), 2jbl(M), 2prc(M), 3d38(M), 3g7f(M), 3prc(M), 3t6e(M), 5nj4(M), 5o4c(M), 5o64(M), 5prc(M), 6et5(M), 6prc(M), 6zhw(M), 6zi4(M), 6zi5(M), 6zi6(M), 6zi9(M), 6zia(M), 6zid(M), 7prc(M),
		5. Ligand: BPB × 69 Bacteriopheophytin b PDB codes: 1dxr(M), 1prc(M), 1r2c(M), 1vrn(M), 2i5n(M), 2jbl(M), 2prc(M), 2wjm(M), 2wjn(M), 2x5u(M), 2x5v(M), 3d38(M), 3g7f(M), 3prc(M), 3t6e(M), 4ac5(M), 4cas(C), 5m7j(C), 5m7k(C), 5m7l(C), 5nj4(M), 5o4c(M), 5o64(M), 5prc(M), 6et5(M), 6prc(M), 6zhw(M), 6zi4(M), 6zi5(M), 6zi6(M), 6zi9(M), 6zia(M), 6zid(M), 7prc(M),
		6. Ligand: NS5 × 31 15-Cis-1,2-Dihydroneurosporene PDB codes: 1dxr(M), 1r2c(M), 1vrn(M), 2i5n(M), 2jbl(M), 2prc(M), 2wjm(M), 2wjn(M), 3d38(M), 3g7f(M), 3prc(M), 3t6e(M), 4ac5(M), 4cas(C), 5m7j(C), 5m7k(C), 5m7l(C), 5nj4(M), 5o4c(M), 5o64(M), 5prc(M), 6et5(M), 6prc(M), 6zhw(M), 6zi4(M), 6zi5(M), 6zi6(M), 6zi9(M), 6zia(M), 6zid(M), 7prc(M).
		7. Ligand: MQ7 × 27 Menaquinone-7 PDB codes: 1prc(M), 1r2c(M), 2jbl(M), 2prc(M), 2wjm(M), 2wjn(M), 2x5u(M), 2x5v(M), 3prc(M), 4ac5(M), 4cas(C), 5m7j(C), 5m7k(C), 5m7l(C), 5nj4(M), 5o4c(M), 5o64(M), 5prc(M), 6prc(M), 6zhw(M), 6zi4(M), 6zi5(M), 6zi6(M), 6zi9(M), 6zia(M), 6zid(M), 7prc(M).
		8. Ligand: BCL × 16 Bacteriochlorophyll a PDB codes: 4cas(C), 5m7j(C), 5m7k(C), 5m7l(C),
		9. Ligand: MPG × 11 [(Z)-Octadec-9-Enyl] (2r)-2,3-Bis(oxidanyl)propanoate PDB codes: 2wjm(M), 2wjn(M), 4cas(C), 5m7j(C), 5m7k(C), 5m7l(C),
		10. Ligand: MQ9 × 7 Menaquinone-9 PDB codes: 1dxr(M), 1vrn(M), 2i5n(M), 3d38(M), 3g7f(M), 3t6e(M), 6et5(M).
		11. Ligand: DGA × 6 Diacyl glycerol PDB codes: 3t6e(M), 4cas(C), 5m7j(C), 5m7k(C), 5m7l(C).
		12. Ligand: HTO × 5 Heptane-1,2,3-Triol PDB codes: 2i5n(M), 3g7f(M), 3t6e(M), 5o64(M).
		13. Ligand: OTP × 4 (2e,6e,10e,14e,18e,22e,26e)-3,7,11,15,19,23,27,31- Octamethyldotriaconta-2,6,10,14,18,22,26,30- Octaenyl trihydrogen diphosphate PDB codes: 4cas(C), 5m7j(C), 5m7k(C), 5m7l(C).
		14. Ligand: UQ1 × 3 Ubiquinone-1 PDB codes: 2i5n(M), 3d38(M), 3g7f(M).
		15. Ligand: UQ9 × 3 Ubiquinone-9 PDB codes: 3t6e(M), 6et5(M).
		16. Ligand: UNL × 2 Unknown ligand PDB codes: 2i5n(M),
		17. Ligand: NS1 × 1 15-Trans-1,2-Dihydroneurosporene PDB code: 1prc(M).

Cluster 2 contains 2 ligand types

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Ligand		Description
		1. Ligand: HEC × 26 Heme c PDB codes: 1dxr(M), 1prc(M), 1vrn(M), 2i5n(M), 2jbl(M), 2wjm(M), 2wjn(M), 2x5u(M), 2x5v(M), 3d38(M), 3g7f(M), 3t6e(M), 4cas(C), 5m7j(C), 5m7k(C), 5m7l(C), 5nj4(M), 5o4c(M), 5o64(M), 6zhw(M), 6zi4(M), 6zi5(M), 6zi6(M), 6zi9(M), 6zia(M), 6zid(M).
		2. Ligand: HEM × 8 Protoporphyrin IX containing fe PDB codes: 1r2c(M), 2prc(M), 3prc(M), 4ac5(M), 5prc(M), 6et5(M), 6prc(M), 7prc(M).

Cluster 3 contains 3 ligand types

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Ligand		Description
		1. Ligand: HTO × 3 Heptane-1,2,3-Triol PDB codes: 5o4c(M), 6zi4(M), 6zi5(M).
		2. Ligand: DGA × 1 Diacyl glycerol PDB code: 3t6e(M).
		3. Ligand: UNL × 1 Unknown ligand PDB code: 2i5n(M).

Cluster 4 contains 4 ligand types

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 3t6e(M).
		2. Ligand: SO4 × 34 Sulfate ion PDB codes: 1dxr(M), 1prc(M), 1r2c(M), 1vrn(M), 2i5n(M), 2jbl(M), 2prc(M), 3d38(M), 3g7f(M), 3prc(M), 3t6e(M), 5nj4(M), 5o4c(M), 5o64(M), 5prc(M), 6et5(M), 6prc(M), 6zhw(M), 6zi4(M), 6zi5(M), 6zi6(M), 6zi9(M), 6zia(M), 6zid(M), 7prc(M).
		3. Ligand: PO4 × 5 Phosphate ion PDB codes: 2wjm(M), 4cas(C), 5m7j(C), 5m7k(C), 5m7l(C).
		4. Ligand: LDA × 2 Lauryl dimethylamine-N-Oxide PDB codes: 3t6e(M),

Cluster 5 contains 3 ligand types

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Ligand		Description
		1. Ligand: SO4 × 25 Sulfate ion PDB codes: 1dxr(M), 1prc(M), 1r2c(M), 1vrn(M), 2i5n(M), 2jbl(M), 2prc(M), 3d38(M), 3g7f(M), 3prc(M), 3t6e(M), 5nj4(M), 5o4c(M), 5o64(M), 5prc(M), 6et5(M), 6prc(M), 6zhw(M), 6zi4(M), 6zi5(M), 6zi6(M), 6zi9(M), 6zia(M), 6zid(M), 7prc(M).
		2. Ligand: LDA × 19 Lauryl dimethylamine-N-Oxide PDB codes: 1dxr(M), 1r2c(M), 1vrn(M), 2i5n(M), 2jbl(M), 2prc(M), 3d38(M), 3g7f(M), 3prc(M), 3t6e(M), 5nj4(M), 5prc(M), 6prc(M), 6zhw(M), 6zi6(M), 6zi9(M), 6zia(M), 6zid(M), 7prc(M).
		3. Ligand: PO4 × 5 Phosphate ion PDB codes: 2wjm(M), 4cas(C), 5m7j(C), 5m7k(C), 5m7l(C).

Cluster 6 contains 2 ligand types

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 3t6e(M).
		2. Ligand: SO4 × 12 Sulfate ion PDB codes: 2i5n(M), 3g7f(M), 5nj4(M), 5o4c(M), 5o64(M), 6zhw(M), 6zi4(M), 6zi5(M), 6zi6(M), 6zi9(M), 6zia(M), 6zid(M).