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Ligand clusters for UniProt code P05798

Ligand clusters for P05798: Guanyl-specific ribonuclease Sa OS=Streptomyces aureofaciens GN=rnaSA PE=1 SV=2

6 ligand clusters
Cluster 1.
5 ligand types
14 ligands
Cluster 2.
1 ligand type
2 ligands
Cluster 3.
1 ligand type
21 ligands
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
1 ligand type
1 ligand
Representative protein: 1gmpA  
JSmol
 

Structures

PDB   Schematic diagram
1gmpA    
1rgfA    
1gmrA    
1rgeA    
1i8vA    
 more ...

 

 Cluster 1 contains 5 ligand types

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Ligand Description


 
1. Ligand: SO4 × 8
Sulfate ion
PDB codes: 1i8v(A), 1rgf(A), 1rgg(A), 1rgh(A), 1ynv(X), 1zgx(A), 4j5g(A).


 
2. Ligand: 2GP × 3
Guanosine-2'-Monophosphate
PDB codes: 1gmp(A), 1gmr(A), 1rge(A).


 
3. Ligand: 3GP × 1
Guanosine-3'-Monophosphate
PDB code: 2sar(A).


 
4. Ligand: GOL × 1
Glycerol
PDB code: 1lni(A).


 
5. Ligand: SGP × 1
Guanosine-2',3'-Cyclophosphorothioate
PDB code: 1rsn(A).

 

 Cluster 2 contains 1 ligand type

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Ligand Description


 
1. Ligand: GOL × 2
Glycerol
PDB codes: 1lni(A), 4j5k(A).

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: SO4 × 21
Sulfate ion
PDB codes: 1gmp(A), 1gmq(A), 1gmr(A), 1i70(A), 1i8v(A), 1lni(A), 1rge(A), 1rgf(A), 1rgg(A), 1rgh(A), 1rsn(A), 1sar(A), 1t2h(A), 1uci(A), 1ucj(A), 1uck(A), 1ucl(A), 2sar(A), 4gho(A), 4j5g(A), 4j5k(A).

 

 Cluster 4 contains 1 ligand type

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Ligand Description


 
1. Ligand: SO4 × 1
Sulfate ion
PDB code: 1zgx(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description


 
1. Ligand: SO4 × 1
Sulfate ion
PDB code: 1zgx(B).

 

 Cluster 6 contains 1 ligand type

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Ligand Description


 
1. Ligand: SO4 × 1
Sulfate ion
PDB code: 4j5g(A).

 

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