Ligand clusters for UniProt code P05050

Ligand clusters for P05050: Alpha-ketoglutarate-dependent dioxygenase AlkB from Escherichia coli (strain K12)

		3 ligand clusters Cluster 1. 16 ligand types 79 ligands Cluster 2. 1 ligand type 1 ligand Cluster 3. 1 ligand type 2 ligands
Representative protein: 2fdjA

Structures

PDB		Schematic diagram
2fdjA
2fdhA
6y0qA
6ypvA
2fd8A
		more ...

Cluster 1 contains 16 ligand types

Use checkboxes to select ligands to display in RasMol, Jmol, or download as an SDF file. Selection shortcuts: select all/none invert selection.
Ligand		Description
_Mn		1. Metal: _MN × 16 PDB codes: 2fdh(A), 3bi3(A), 3bie(A), 3bkz(A), 3i3m(A), 3i3q(A), 3o1m(A), 3o1o(A), 3o1p(A), 3o1r(A), 4jht(A), 4nid(A), 4nig(A), 4nih(A), 4nii(A), 4rfr(B).
_Fe		2. Metal: _FE × 9 PDB codes: 3o1s(A), 3o1t(A), 3o1u(A), 3o1v(A), 3t3y(A), 3t4h(B), 3t4v(A), 6y0q(A), 6ypv(A).
		3. Ligand: SIN × 8 succinic acid Succinic acid PDB codes: 2fdg(A), 2fdi(A), 2fdj(A), 2fdk(A), 3o1s(A), 3o1t(A), 3o1u(A), 3o1v(A).
		4. Ligand: DMS × 1 dimethyl sulfoxide Dimethyl sulfoxide PDB code: 4jht(A).
		5. Ligand: GOL × 1 glycerin Glycerol PDB code: 3t4v(A).
		6. Ligand: AKG × 25 2-Oxoglutaric acid PDB codes: 2fd8(A), 2fdf(A), 2fdh(A), 2fdi(A), 2fdk(A), 3bi3(A), 3bie(A), 3bkz(A), 3i2o(A), 3i3m(A), 3i3q(A), 3i49(A), 3khb(A), 3khc(A), 3o1m(A), 3o1o(A), 3o1p(A), 3o1r(A), 4nid(A), 4nig(A), 4nih(A), 4nii(A), 4zhn(A), 6y0q(A), 6ypv(A).
Fe2		7. Metal: FE2 × 7 PDB codes: 2fd8(A), 2fdg(A), 2fdi(A), 2fdj(A), 2fdk(A), 3i2o(A), 3i49(A).
_Co		8. Metal: _CO × 4 PDB codes: 2fdf(A), 3khb(A), 3khc(A), 4zhn(A).
		9. Ligand: 8XQ × 1 8-Hydroxyquinoline-5-Carboxylic acid PDB code: 4jht(A).
		10. Ligand: ACT × 1 Acetate ion PDB code: 4jht(A).
		11. Ligand: EPE × 1 4-(2-Hydroxyethyl)-1-Piperazine ethanesulfonic acid PDB code: 3t4h(B).
		12. Ligand: MD3 × 1 N-(Carboxycarbonyl)-S-(Naphthalen-2-Ylmethyl)-L- Cysteine PDB code: 3t4v(A).
		13. Ligand: MD5 × 1 N-(Carboxycarbonyl)-S-(3-Nitrobenzyl)-L-Cysteine PDB code: 3t4h(B).
		14. Ligand: MD6 × 1 N-[(3-Hydroxypyridin-2-Yl)carbonyl]glycine PDB code: 3t3y(A).
		15. Ligand: O5W × 1 [(3~{s},5~{r})-5-(6-Azanyl-1-Methyl-Purin-9-Yl)-2- (Phosphonooxymethyl)oxolan-3- Yl] [(2~{r},3~{s},5~{r})- 5-[5-Methyl-2,4-Bis(oxidanylidene)pyrimidin-1-Yl]-3- Oxidanyl-Oxolan-2- Yl]methyl hydrogen phosphate PDB code: 6y0q(A).
		16. Ligand: RHN × 1 4,5-Dihydroxy-9,10-Dioxo-9,10-Dihydroanthracene-2- Carboxylic acid PDB code: 4rfr(B).

Cluster 2 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 3o1p(A).

Cluster 3 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: GOL × 2 glycerin Glycerol PDB codes: 3o1r(A), 4nih(A).