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EBI
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PDBsum
Ligand clusters for UniProt code P04252
Ligand clusters for P04252: Bacterial hemoglobin OS=Vitreoscilla stercoraria GN=vhb PE=1 SV=1
Top 6 (of 9) ligand clusters
Cluster 1.
4 ligand types
7 ligands
Cluster 2.
2 ligand types
2 ligands
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
1 ligand type
1 ligand
Representative protein: 3tm9A
Structures
PDB
Schematic diagram
3tm9
A
3tm3
A
3tld
A
1vhb
A
4vhb
A
more ...
Cluster 1 contains 4 ligand types
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Ligand
Description
1. Ligand:
HEM × 4
Protoporphyrin IX containing fe
PDB codes:
1vhb
(A),
3tld
(A),
3tm3
(A),
3tm9
(A).
2. Ligand:
AZI-HEM × 1
AZI
=Azide ion,
HEM
=Protoporphyrin IX containing fe.
PDB code:
2vhb
(A).
3. Ligand:
HEM-IMD × 1
HEM
=Protoporphyrin IX containing fe,
IMD
=Imidazole.
PDB code:
3vhb
(A).
4. Ligand:
SCN-HEM × 1
SCN
=Thiocyanate ion,
HEM
=Protoporphyrin IX containing fe.
PDB code:
4vhb
(A).
Cluster 2 contains 2 ligand types
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Ligand
Description
1. Ligand:
EDO × 1
1,2-Ethanediol
PDB code:
3tm9
(A).
2. Ligand:
GOL × 1
Glycerol
PDB code:
3tld
(A).
Cluster 3 contains 1 ligand type
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Ligand
Description
1. Ligand:
GOL × 1
Glycerol
PDB code:
3tld
(A).
Cluster 4 contains 1 ligand type
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Ligand
Description
1. Ligand:
EDO × 1
1,2-Ethanediol
PDB code:
3tm9
(A).
Cluster 5 contains 1 ligand type
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Ligand
Description
1. Ligand:
EDO × 1
1,2-Ethanediol
PDB code:
3tm9
(A).
Cluster 6 contains 1 ligand type
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Ligand
Description
1. Ligand:
EDO × 1
1,2-Ethanediol
PDB code:
3tm9
(A).