spacer
spacer
EBI Databases Structure Databases PDBsum

Ligand clusters for UniProt code P04058

Ligand clusters for P04058: Acetylcholinesterase from Tetronarce californica

Top 6 (of 41) ligand clusters
Cluster 1.
100 ligand types
197 ligands
 Cluster 2.
5 ligand types
90 ligands
 Cluster 3.
5 ligand types
97 ligands
 Cluster 4.
7 ligand types
17 ligands
 Cluster 5.
4 ligand types
20 ligands
 Cluster 6.
5 ligand types
16 ligands
Representative protein: 3zv7A  
JSmol
 

Structures

PDB   Schematic diagram
3zv7A    
1vxoA    
2ackA    
2j4fA    
1w4lA    
 more ...

 

 Cluster 1 contains 100 ligand types (of which only 20 are listed. Click for all)

Use checkboxes to select ligands to display in RasMol, Jmol, or download as an SDF file.
Selection shortcuts: select all/none invert selection.
Ligand Description


 
1. Ligand: ACT × 1
Acetate ion
PDB code: 2c4h(A).


 
2. Ligand: NAG × 27
n-acetylglucosamine
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose
PDB codes: 1dx6(A), 1e3q(A), 1eve(A), 1gpk(A), 1w4l(A), 1zgc(A), 2cek(A), 2j3d(A), 2j3q(A), 2w6c(X), 2xi4(A), 3m3d(A), 4tvk(A), 4w63(A), 5ehx(A), 5ei5(A), 6euc(A), 6ewk(A), 6fld(A), 6fqn(A), 6g1u(A), 6g1v(A), 6g1w(A), 6h13(A), 6h14(A), 7b38(A), 7b8e(A).


 
3. Ligand: GNT × 4
galantamine
(-)-Galanthamine
PDB codes: 1dx6(A), 1qti(A), 1w6r(A), 1w76(A).


 
4. Ligand: DME × 3
decamethonium
Decamethonium ion
PDB codes: 1acl(A), 5e2i(A), 5e4j(A).


 
5. Ligand: EDR × 2
edrophonium
Edrophonium ion
PDB codes: 1ax9(A), 2ack(A).


 
6. Ligand: HUP × 2
huperzine a
Huperzine a
PDB codes: 1gpk(A), 1vot(A).


 
7. Ligand: TRS × 2
tromethamine
2-Amino-2-Hydroxymethyl-Propane-1,3-Diol
PDB codes: 2wfz(A), 2wg2(A).


 
8. Ligand: ACH × 1
acetylcholine
Acetylcholine
PDB code: 2ace(A).


 
9. Ligand: CP0 × 1
irinotecan
(4s)-4,11-Diethyl-4-Hydroxy-3,14-Dioxo-3,4,12,14- Tetrahydro-1h-Pyrano[3',4':6,7]indolizino[1,2-
B]quinolin-9-Yl 1,4'-Bipiperidine-1'-Carboxylate
PDB code: 1u65(A).


 
10. Ligand: GOL × 1
glycerin
Glycerol
PDB code: 7b38(A).


 
11. Ligand: THA × 1
tacrine
Tacrine
PDB code: 1acj(A).


 
12. Ligand: ETM × 3
2-(Trimethylammonium)ethyl thiol
PDB codes: 2c58(A), 2c5g(A),


 
13. Ligand: AT3 × 3
Acetylthiocholine
PDB codes: 2c4h(A), 2c58(A).


 
14. Ligand: CHH × 1
N,N,N-Trimethyl-4-Oxopentan-1-Aminium
PDB code: 2c5f(A).


 
15. Ligand: NWA × 1
4,4-Dihydroxy-N,N,N-Trimethylpentan-1-Aminium
PDB code: 2c5f(A).


 
16. Ligand: MES × 1
2-(N-Morpholino)-Ethanesulfonic acid
PDB code: 2bag(A).


 
17. Ligand: EMM × 1
[Methyl(vinyl)amino]methanol
PDB code: 1gqr(A).


 
18. Ligand: MF2 × 1
Cis-2,6-Dimethylmorpholinooctylcarbamyleseroline
PDB code: 1oce(A).


 
19. Ligand: SAF × 2
3-[(1s)-1-(Dimethylamino)ethyl]phenol
PDB codes: 1gqr(A), 1gqs(A).


 
20. Ligand: PG4 × 2
Tetraethylene glycol
PDB codes: 1dx6(A), 1hbj(A).

 + more. Press for full list
 

 

 Cluster 2 contains 5 ligand types

Selection shortcuts: select all/none invert selection.
Ligand Description


 
1. Ligand: NAG × 64
n-acetylglucosamine
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose
PDB codes: 1e3q(A), 1e66(A), 1ea5(A), 1gpn(A), 1gqr(A), 1gqs(A), 1h22(A), 1h23(A), 1jjb(A), 1odc(A), 1som(A), 1u65(A), 1ut6(A), 1vxo(A), 1w6r(A), 1w75(A), 1w76(A), 1zgb(A), 1zgc(A), 2bag(A), 2c4h(A), 2c58(A), 2c5f(A), 2c5g(A), 2ckm(A), 2cmf(A), 2j3d(A), 2j3q(A), 2v96(A), 2va9(A), 2vja(A), 2vjb(A), 2vjc(A), 2vjd(A), 2vq6(A), 2vt6(A), 2vt7(A), 2xi4(A), 3m3d(A), 5bwb(A), 5bwc(A), 5dlp(A), 5e2i(A), 5e4j(A), 6euc(A), 6eue(A), 6ewk(A), 6ezg(A), 6ezh(A), 6fld(A), 6fqn(A), 6g17(A), 6g1u(A), 6g1v(A), 6g1w(A), 6g4m(A), 6g4n(A), 6g4o(A), 6g4p(A), 6h12(A), 6h13(A), 6h14(A), 6tt0(A), 7b38(A).


 
2. Ligand: NAG-NAG × 20
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose.
PDB codes: 1dx6(A), 1eve(A), 1gpk(A), 1hbj(A), 1w4l(A), 2cek(A), 2dfp(A), 2w6c(X), 2wfz(A), 2wg2(A), 3i6m(A), 3i6z(A), 3zv7(A), 4tvk(A), 4w63(A), 4x3c(A), 5ehx(A), 5ei5(A), 5ih7(A), 7b8e(A).


 
3. Ligand: NAG-NAG-BMA-MAN × 4
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose.
PDB codes: 5e4t(A), 5nap(A), 5nau(A), 5nuu(A).


 
4. Ligand: EDO × 1
1,2-Ethanediol
PDB code: 6fld(A).


 
5. Ligand: PGE × 1
Triethylene glycol
PDB code: 2cek(A).

 

 Cluster 3 contains 5 ligand types

Selection shortcuts: select all/none invert selection.
Ligand Description


 
1. Ligand: NAG × 78
n-acetylglucosamine
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose
PDB codes: 1dx6(A), 1e3q(A), 1e66(A), 1ea5(A), 1eve(A), 1fss(A), 1gpk(A), 1gpn(A), 1gqr(A), 1gqs(A), 1h22(A), 1h23(A), 1hbj(A), 1jjb(A), 1odc(A), 1som(A), 1ut6(A), 1vxo(A), 1w4l(A), 1w6r(A), 1w75(A), 1w76(A), 1zgb(A), 1zgc(A), 2bag(A), 2c4h(A), 2c58(A), 2c5f(A), 2c5g(A), 2cek(A), 2ckm(A), 2cmf(A), 2dfp(A), 2j3d(A), 2j3q(A), 2v96(A), 2va9(A), 2vja(A), 2vjb(A), 2vjc(A), 2vjd(A), 2vq6(A), 2vt6(A), 2vt7(A), 2w6c(X), 2xi4(A), 3i6m(A), 3i6z(A), 3zv7(A), 4tvk(A), 4w63(A), 4x3c(A), 5bwb(A), 5bwc(A), 5e2i(A), 5e4j(A), 5ehx(A), 5ei5(A), 5ih7(A), 6euc(A), 6eue(A), 6ewk(A), 6ezg(A), 6ezh(A), 6fld(A), 6fqn(A), 6g17(A), 6g1u(A), 6g1v(A), 6g1w(A), 6g4m(A), 6g4n(A), 6g4o(A), 6g4p(A), 6h12(A), 6h13(A), 6h14(A), 6tt0(A).


 
2. Ligand: NAG-FUC × 10
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, FUC=Alpha-L-Fucopyranose.
PDB codes: 1u65(A), 2wfz(A), 2wg2(A), 5dlp(A), 5e4t(A), 5nap(A), 5nau(A), 5nuu(A), 7b38(A), 7b8e(A).


 
3. Ligand: PEG × 5
Di(hydroxyethyl)ether
PDB codes: 2wfz(A), 2wg2(A), 2xi4(A), 3m3d(A), 6g1u(A).


 
4. Ligand: EDO × 3
1,2-Ethanediol
PDB codes: 5e4t(A), 6fld(A), 6h14(A).


 
5. Ligand: PGE × 1
Triethylene glycol
PDB code: 5e4t(A).

 

 Cluster 4 contains 7 ligand types

Selection shortcuts: select all/none invert selection.
Ligand Description


 
1. Ligand: MES × 1
2-(N-Morpholino)-Ethanesulfonic acid
PDB code: 2cek(A).


 
2. Ligand: PEG × 7
Di(hydroxyethyl)ether
PDB codes: 3m3d(A), 5e4t(A), 6g17(A),


 
3. Ligand: PG4 × 4
Tetraethylene glycol
PDB codes: 2wfz(A), 2wg2(A),


 
4. Ligand: 1PE × 2
Pentaethylene glycol
PDB codes: 6euc(A), 6ewk(A).


 
5. Ligand: MES × 1
2-(N-Morpholino)-Ethanesulfonic acid
PDB code: 3zv7(A).


 
6. Ligand: EDO × 1
1,2-Ethanediol
PDB code: 5e4t(A).


 
7. Ligand: PGE × 1
Triethylene glycol
PDB code: 2c58(A).

 

 Cluster 5 contains 4 ligand types

Selection shortcuts: select all/none invert selection.
Ligand Description


 
1. Ligand: PGE × 10
Triethylene glycol
PDB codes: 2c4h(A), 2c58(A), 2c5g(A), 2cek(A), 2vja(A), 2vjb(A), 2vjc(A), 2vjd(A), 2vt6(A), 2vt7(A).


 
2. Ligand: PEG × 7
Di(hydroxyethyl)ether
PDB codes: 3m3d(A), 5e2i(A), 5e4t(A), 6g1u(A), 6g1v(A), 6h13(A), 6h14(A).


 
3. Ligand: PG4 × 2
Tetraethylene glycol
PDB codes: 2wfz(A), 2wg2(A).


 
4. Ligand: 1PE × 1
Pentaethylene glycol
PDB code: 6eue(A).

 

 Cluster 6 contains 5 ligand types

Selection shortcuts: select all/none invert selection.
Ligand Description


 
1. Ligand: PEG × 5
Di(hydroxyethyl)ether
PDB codes: 3m3d(A), 5e4t(A), 6g17(A), 6h12(A).


 
2. Ligand: EDO × 4
1,2-Ethanediol
PDB codes: 3zv7(A), 5e4t(A), 7b38(A),


 
3. Ligand: PGE × 4
Triethylene glycol
PDB codes: 2c58(A), 2c5f(A), 2c5g(A), 2cek(A).


 
4. Ligand: PG4 × 2
Tetraethylene glycol
PDB codes: 2wfz(A), 2wg2(A).


 
5. Ligand: SO4 × 1
Sulfate ion
PDB code: 6h14(A).

 

spacer
spacer