Ligand clusters for UniProt code P03089

Ligand clusters for P03089: Major capsid protein VP1 OS=JC polyomavirus PE=1 SV=1

		Top 6 (of 13) ligand clusters Cluster 1. 2 ligand types 2 ligands Cluster 2. 1 ligand type 1 ligand Cluster 3. 1 ligand type 1 ligand Cluster 4. 2 ligand types 17 ligands Cluster 5. 2 ligand types 3 ligands Cluster 6. 1 ligand type 12 ligands
Representative protein: 3nxdC

Structures

PDB		Schematic diagram
3nxdC
4jcdA
4x15A
4jcfC
4we0A
		more ...

Cluster 1 contains 2 ligand types

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Ligand		Description
		1. Ligand: SIA-BGC-GAL-NAG-GAL × 1 SIA=O-Sialic acid, BGC=Beta-D-Glucose, GAL=Beta-D-Galactose, NAG=N-Acetyl-D-Glucosamine. PDB code: 3nxd(C).
		2. Ligand: SIA-NAG-GAL × 1 SIA=O-Sialic acid, NAG=N-Acetyl-D-Glucosamine, GAL=Beta-D-Galactose. PDB code: 4jcf(C).

Cluster 2 contains 1 ligand type

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Ligand		Description
		1. Ligand: SIA-BGC-GAL-NAG-GAL × 1 SIA=O-Sialic acid, BGC=Beta-D-Glucose, GAL=Beta-D-Galactose, NAG=N-Acetyl-D-Glucosamine. PDB code: 3nxd(C).

Cluster 3 contains 1 ligand type

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Ligand		Description
		1. Ligand: SIA-GAL-NGA-GAL × 1 SIA=O-Sialic acid, GAL=Beta-D-Galactose, NGA=N-Acetyl-D-Galactosamine. PDB code: 4x14(A).

Cluster 4 contains 2 ligand types

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Ligand		Description
		1. Ligand: EDO × 13 1,2-Ethanediol PDB codes: 3nxd(C), 3nxg(A), 4jcd(A), 4wdy(A), 4x14(A), 4x15(A), 4x16(A), 4x17(A).
		2. Ligand: GOL × 4 Glycerol PDB codes: 4wdz(A), 4x17(A),

Cluster 5 contains 2 ligand types

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Ligand		Description
		1. Ligand: GOL × 2 Glycerol PDB codes: 4x15(A), 4x17(A).
		2. Ligand: EDO × 1 1,2-Ethanediol PDB code: 4x14(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 12 Glycerol PDB codes: 3nxd(C), 3nxg(A), 4jcd(A), 4jce(A), 4jcf(C), 4wdy(A), 4wdz(A), 4we0(A), 4x14(A), 4x15(A), 4x16(A), 4x17(A).