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EBI
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PDBsum
Ligand clusters for UniProt code P02786
Ligand clusters for P02786: Transferrin receptor protein 1 from Homo sapiens
Top 6 (of 12) ligand clusters
Cluster 1.
3 ligand types
8 ligands
Cluster 2.
3 ligand types
11 ligands
Cluster 3.
3 ligand types
9 ligands
Cluster 4.
2 ligand types
3 ligands
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
2 ligand types
2 ligands
Representative protein: 6d03A
Structures
PDB
Schematic diagram
6d03
A
3s9l
A
1de4
C
3s9m
A
6wrx
A
more ...
Cluster 1 contains 3 ligand types
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Ligand
Description
1. Ligand:
NAG × 6
n-acetylglucosamine
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose
PDB codes:
1cx8
(A),
3kas
(A),
6d03
(A),
6d04
(A),
6d05
(A),
6okd
(A).
2. Ligand:
NAG-NAG × 1
NAG
=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose.
PDB code:
6wrw
(A).
3. Ligand:
NAG-NAG-BMA × 1
NAG
=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose,
BMA
=Beta-D-Mannopyranose.
PDB code:
6wrv
(A).
Cluster 2 contains 3 ligand types
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Ligand
Description
1. Ligand:
NAG × 5
n-acetylglucosamine
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose
PDB codes:
1cx8
(A),
1de4
(C),
3s9l
(A),
3s9m
(A),
3s9n
(A).
2. Ligand:
NAG-NAG × 3
NAG
=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose.
PDB codes:
6d03
(A),
6d04
(A),
6d05
(A).
3. Ligand:
NAG-NAG-BMA × 3
NAG
=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose,
BMA
=Beta-D-Mannopyranose.
PDB codes:
6wrv
(A),
6wrw
(A),
6wrx
(A).
Cluster 3 contains 3 ligand types
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Ligand
Description
1. Ligand:
NAG × 3
n-acetylglucosamine
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose
PDB codes:
1cx8
(A),
3kas
(A),
6okd
(A).
2. Ligand:
NAG-NAG × 4
NAG
=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose.
PDB codes:
6d03
(A),
6d04
(A),
6d05
(A),
6wrw
(A).
3. Ligand:
NAG-NAG-BMA × 2
NAG
=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose,
BMA
=Beta-D-Mannopyranose.
PDB codes:
6wrv
(A),
6wrx
(A).
Cluster 4 contains 2 ligand types
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Ligand
Description
1. Ligand:
NAG × 2
n-acetylglucosamine
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose
PDB codes:
1cx8
(A),
1de4
(C).
2. Ligand:
NAG-NAG × 1
NAG
=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose.
PDB code:
6d04
(A).
Cluster 5 contains 1 ligand type
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Ligand
Description
1. Ligand:
MES × 1
2-(N-Morpholino)-Ethanesulfonic acid
PDB code:
6okd
(A).
Cluster 6 contains 2 ligand types
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Ligand
Description
1. Ligand:
GOL × 1
glycerin
Glycerol
PDB code:
6okd
(A).
2. Ligand:
PO4 × 1
Phosphate ion
PDB code:
3kas
(A).