Ligand clusters for UniProt code P02185

Ligand clusters for P02185: Myoglobin from Physeter macrocephalus

		Top 6 (of 27) ligand clusters Cluster 1. 63 ligand types 457 ligands Cluster 2. 8 ligand types 44 ligands Cluster 3. 6 ligand types 14 ligands Cluster 4. 1 ligand type 4 ligands Cluster 5. 4 ligand types 139 ligands Cluster 6. 5 ligand types 29 ligands
Representative protein: 6g5tA

Structures

PDB		Schematic diagram
6g5tA
6z4tA
1ircA
1dtmA
106mA
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Cluster 1 contains 63 ligand types (of which only 20 are listed. Click for all)

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Ligand		Description
		1. Ligand: GOL × 6 glycerin Glycerol PDB codes: 2e2y(A), 5ilm(A), 5kd1(A), 5ut8(A), 5uta(A), 6cf0(A).
		2. Ligand: IPH × 2 phenol Phenol PDB codes: 3u3e(A), 4h07(A).
		3. Ligand: DMS × 1 dimethyl sulfoxide Dimethyl sulfoxide PDB code: 4h0b(A).
		4. Ligand: JZ3 × 1 guaiacol Guaiacol PDB code: 6krf(A).
_Fe		5. Metal: _FE × 1 PDB code: 1ufj(A).
_Mn		6. Metal: _MN × 1 PDB code: 5vnu(A).
_Zn		7. Metal: _ZN × 1 PDB code: 3m3b(A).
		8. Ligand: HEM × 162 Protoporphyrin IX containing fe PDB codes: 102m(A), 108m(A), 1a6k(A), 1a6n(A), 1abs(A), 1bz6(A), 1bzp(A), 1ch1(A), 1ch2(A), 1ch3(A), 1ch5(A), 1ch7(A), 1ch9(A), 1cik(A), 1cio(A), 1co8(A), 1co9(A), 1cp0(A), 1cp5(A), 1cpw(A), 1do3(A), 1do4(A), 1dti(A), 1duk(A), 1dxd(A), 1ebc(A), 1f63(A), 1f6h(A), 1fcs(A), 1j52(A), 1jp6(A), 1jp8(A), 1jp9(A), 1jpb(A), 1lue(A), 1mbd(A), 1mgn(A), 1mlg(A), 1mlh(A), 1mlk(A), 1mll(A), 1mln(A), 1mlo(A), 1mlr(A), 1mls(A), 1moa(A), 1mob(A), 1mod(A), 1mti(A), 1mtj(A), 1mtk(A), 1o16(A), 1obm(A), 1ofj(A), 1ofk(A), 1swm(A), 1u7s(A), 1vxa(A), 1vxb(A), 1vxd(A), 1vxe(A), 1vxg(A), 1vxh(A), 1wvp(A), 2blh(A), 2bli(A), 2bwh(A), 2e2y(A), 2mbw(A), 2mgb(A), 2mgd(A), 2mge(A), 2mgg(A), 2mgh(A), 2mgi(A), 2mgj(A), 2mgl(A), 2oh8(A), 2oh9(A), 2oha(A), 2ohb(A), 2spm(A), 2spo(A), 2w6w(A), 2w6x(A), 2w6y(A), 3a2g(A), 3ecl(A), 3h57(A), 3h58(A), 3k9z(A), 3m38(A), 3m39(A), 3m3a(A), 3m3b(A), 3mn0(A), 3o89(A), 3ogb(A), 3u3e(A), 4fwx(A), 4fwy(A), 4fwz(A), 4h07(A), 4it8(A), 4lpi(A), 4mbn(A), 4nxa(A), 4nxc(A), 4of9(A), 4ood(A), 4pnj(A), 4pq6(A), 4pqb(A), 4pqc(A), 4qau(A), 4tyx(A), 5b84(A), 5b85(A), 5c6y(A), 5hlq(A), 5hlx(A), 5jom(A), 5kd1(A), 5m3r(A), 5m3s(A), 5mbn(A), 5o41(A), 5oj9(A), 5ut8(A), 5ut9(A), 5uta(A), 5utb(A), 5utc(A), 5utd(A), 5vnu(A), 5vrt(A), 5wjk(A), 5xkv(A), 5xkw(A), 5yce(A), 5ych(A), 5yzf(A), 5zeo(A), 5zzf(A), 5zzg(A), 6d45(A), 6e03(A), 6f17(A), 6f19(A), 6f1a(A), 6jp1(A), 6krc(A), 6krf(A), 6m8f(A), 6mv0(A), 6n02(A), 6n03(A), 6z4r(A), 7a44(A), 7a45(A), 7kyr(A), 7l3u(A).
		9. Ligand: SO4 × 114 Sulfate ion PDB codes: 104m(A), 105m(A), 1a6g(A), 1a6k(A), 1a6m(A), 1a6n(A), 1ajg(A), 1ajh(A), 1bz6(A), 1bzp(A), 1bzr(A), 1ebc(A), 1fcs(A), 1jp6(A), 1jp8(A), 1jp9(A), 1jpb(A), 1l2k(A), 1mbc(A), 1mbd(A), 1mbi(A), 1mbo(A), 1spe(A), 1vxa(A), 1vxb(A), 1vxc(A), 1vxd(A), 1vxe(A), 1vxf(A), 1vxg(A), 1vxh(A), 1yog(A), 1yoh(A), 1yoi(A), 2ekt(A), 2eku(A), 2jho(A), 2mya(A), 2myb(A), 2myc(A), 2myd(A), 2mye(A), 2oh8(A), 2oh9(A), 2oha(A), 2ohb(A), 2w6w(A), 2zsn(A), 2zso(A), 2zsp(A), 2zsq(A), 2zsr(A), 2zss(A), 2zst(A), 2zsx(A), 2zsy(A), 2zsz(A), 2zt0(A), 2zt1(A), 2zt2(A), 2zt3(A), 2zt4(A), 3a2g(A), 3e4n(A), 3e55(A), 3e5i(A), 3e5o(A), 3ecl(A), 3ecx(A), 3ecz(A), 3ed9(A), 3eda(A), 3edb(A), 3u3e(A), 4h07(A), 4h0b(A), 4nxa(A), 4nxc(A), 4of9(A), 4ood(A), 4pnj(A), 5ilp(A), 5jom(A), 5kkk(A), 5m3r(A), 5m3s(A), 5o41(A), 5utb(A), 5utc(A), 5wjk(A), 5xl0(A), 5yce(A), 6e03(A), 6mv0(A), 6n02(A), 6n03(A), 7a44(A), 7a45(A), 7kyr(A).
		10. Ligand: HEM-CMO × 66 HEM=Protoporphyrin IX containing fe, CMO=Carbon monoxide. PDB codes: 1a6g(A), 1ajg(A), 1ajh(A), 1bzr(A), 1do1(A), 1do7(A), 1dxc(A), 1jw8(A), 1mbc(A), 1mcy(A), 1mlf(A), 1mlj(A), 1mlm(A), 1mlq(A), 1mlu(A), 1moc(A), 1myf(A), 1mym(A), 1myz(A), 1mz0(A), 1spe(A), 1vxc(A), 1vxf(A), 2blj(M), 2bw9(M), 2g0r(A), 2g0s(A), 2g0v(A), 2g0x(A), 2g0z(A), 2g10(A), 2g11(A), 2g12(A), 2g14(A), 2mb5(A), 2mga(A), 2mgc(A), 2mgf(A), 2mgk(A), 2spl(A), 2zsn(A), 2zso(A), 2zsp(A), 2zsq(A), 2zsr(A), 2zss(A), 2zst(A), 2zsx(A), 2zsy(A), 2zsz(A), 2zt0(A), 2zt1(A), 2zt2(A), 2zt3(A), 2zt4(A), 3e4n(A), 3e55(A), 3e5i(A), 3e5o(A), 3ecx(A), 3ecz(A), 3ed9(A), 3eda(A), 3edb(A), 3nml(A), 5kkk(A).
		11. Ligand: HEM-OXY × 10 HEM=Protoporphyrin IX containing fe, OXY=Oxygen molecule. PDB codes: 1a6m(A), 1f65(A), 1ltw(A), 1mbo(A), 2mgm(A), 2spn(A), 2z6s(A), 4h0b(A), 5hav(A), 6z4t(A).
		12. Ligand: HEM-NBN × 7 HEM=Protoporphyrin IX containing fe, NBN=N-Butyl isocyanide. PDB codes: 101m(A), 103m(A), 104m(A), 105m(A), 107m(A), 111m(A), 2myc(A).
		13. Ligand: PO4 × 6 Phosphate ion PDB codes: 1j3f(A), 1ufj(A), 1ufp(A), 1v9q(A), 2eb8(A),
		14. Ligand: HEM-IMD × 5 HEM=Protoporphyrin IX containing fe, IMD=Imidazole. PDB codes: 1irc(A), 1mbi(A), 1u7r(A), 5ojb(A), 5ojc(A).
		15. Ligand: HEM-ENC × 4 HEM=Protoporphyrin IX containing fe, ENC=Ethyl isocyanide. PDB codes: 106m(A), 109m(A), 2mya(A), 2mye(A).
		16. Ligand: CZM × 3 'N,N'-Bis-(2-Hydroxy-3-Methyl-Benzylidene)-Benzene-1, 2-Diamine' PDB codes: 1j3f(A), 1ufj(A), 1v9q(A).
Fe2		17. Metal: FE2 × 3 PDB codes: 3k9z(A), 3m39(A), 4mxk(A).
		18. Ligand: HEM-EEE × 3 HEM=Protoporphyrin IX containing fe, EEE=Ethyl acetate. PDB codes: 6f18(A), 6g5a(A), 6g5b(A).
		19. Ligand: ZNH × 3 Protoporphyrin IX containing zn PDB codes: 3ase(A), 4mxk(A), 4mxl(A).
_Cu		20. Metal: _CU × 3 PDB codes: 3m3a(A), 3mn0(A), 4fwy(A).
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Cluster 2 contains 8 ligand types

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Ligand		Description
		1. Ligand: GOL × 7 glycerin Glycerol PDB codes: 2eb9(A), 3a2g(A), 5ilm(A), 5kd1(A), 5uta(A), 5utc(A), 6cf0(A).
		2. Ligand: SO4 × 26 Sulfate ion PDB codes: 1do1(A), 1do3(A), 1do4(A), 1do7(A), 1dxc(A), 1dxd(A), 1f65(A), 1jp9(A), 1jpb(A), 1jw8(A), 1wvp(A), 2e2y(A), 2ekt(A), 2w6w(A), 2w6y(A), 3ase(A), 3ogb(A), 4pnj(A), 5ile(A), 5ilm(A), 5m3r(A), 5o41(A), 5ut8(A), 6e03(A), 6e04(A), 6m8f(A).
		3. Ligand: PO4 × 6 Phosphate ion PDB codes: 1bvc(A), 1j3f(A), 1ufj(A), 1ufp(A), 1v9q(A), 2eb9(A).
		4. Ligand: EDO × 1 1,2-Ethanediol PDB code: 4ood(A).
		5. Ligand: ND4 × 1 Ammonium cation with d PDB code: 2mb5(A).
		6. Ligand: RUO × 1 Oxo-Centered triruthenium cluster PDB code: 3ase(A).
_Cl		7. Metal: _CL × 1 PDB code: 6e03(A).
_Cu		8. Metal: _CU × 1 PDB code: 4fwy(A).

Cluster 3 contains 6 ligand types

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Ligand		Description
		1. Ligand: GOL × 5 glycerin Glycerol PDB codes: 2w6w(A), 5kd1(A), 5ut7(A), 5ut9(A), 5utb(A).
		2. Ligand: PO4 × 4 Phosphate ion PDB codes: 1bvc(A), 1j3f(A), 1v9q(A), 2ef2(A).
		3. Ligand: SO4 × 2 Sulfate ion PDB codes: 3ogb(A), 4ood(A).
		4. Ligand: ND4 × 1 Ammonium cation with d PDB code: 2mb5(A).
		5. Ligand: RUO × 1 Oxo-Centered triruthenium cluster PDB code: 3ase(A).
_Cu		6. Metal: _CU × 1 PDB code: 4fwy(A).

Cluster 4 contains 1 ligand type

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Ligand		Description
		1. Ligand: GLC-GLC × 4 GLC=Alpha-D-Glucopyranose. PDB codes: 1do1(A), 1do3(A), 1do4(A), 1do7(A).

Cluster 5 contains 4 ligand types

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 6cf0(A).
		2. Ligand: SO4 × 133 Sulfate ion PDB codes: 101m(A), 102m(A), 103m(A), 106m(A), 107m(A), 108m(A), 109m(A), 110m(A), 111m(A), 112m(A), 1abs(A), 1ch1(A), 1ch2(A), 1ch3(A), 1ch5(A), 1ch7(A), 1ch9(A), 1cik(A), 1cio(A), 1co8(A), 1co9(A), 1cp0(A), 1cp5(A), 1cpw(A), 1dxc(A), 1dxd(A), 1f63(A), 1f65(A), 1fcs(A), 1iop(A), 1j52(A), 1jp6(A), 1jp8(A), 1jp9(A), 1jpb(A), 1jw8(A), 1ltw(A), 1lue(A), 1mcy(A), 1mgn(A), 1mlf(A), 1mlg(A), 1mlh(A), 1mlj(A), 1mlk(A), 1mll(A), 1mlm(A), 1mln(A), 1mlo(A), 1mlq(A), 1mlr(A), 1mls(A), 1mlu(A), 1moa(A), 1mob(A), 1moc(A), 1mod(A), 1mti(A), 1mtj(A), 1mtk(A), 1mym(A), 1myz(A), 1mz0(A), 1o16(A), 1obm(A), 1ofj(A), 1ofk(A), 1swm(A), 1tes(A), 1wvp(A), 2e2y(A), 2eku(A), 2g0r(A), 2g0s(A), 2g0v(A), 2g0x(A), 2g0z(A), 2g10(A), 2g11(A), 2g12(A), 2g14(A), 2mbw(A), 2mga(A), 2mgb(A), 2mgc(A), 2mgd(A), 2mge(A), 2mgf(A), 2mgg(A), 2mgh(A), 2mgi(A), 2mgj(A), 2mgk(A), 2mgl(A), 2mgm(A), 2oh8(A), 2oh9(A), 2oha(A), 2ohb(A), 2spl(A), 2spm(A), 2spn(A), 2spo(A), 2w6w(A), 2z6s(A), 2z6t(A), 3a2g(A), 3ase(A), 3nml(A), 3u3e(A), 4h07(A), 4h0b(A), 4of9(A), 5iks(A), 5ile(A), 5ilm(A), 5ilp(A), 5ilr(A), 5kd1(A), 5kkk(A), 5ut8(A), 5ut9(A), 5uta(A), 5utb(A), 5utc(A), 5utd(A), 5wjk(A), 5xl0(A), 5ych(A), 6e02(A), 6e03(A), 6e04(A), 6m8f(A).
		3. Ligand: PO4 × 4 Phosphate ion PDB codes: 1j3f(A), 1ufj(A), 1ufp(A), 1v9q(A).
		4. Ligand: EDO × 1 1,2-Ethanediol PDB code: 4ood(A).

Cluster 6 contains 5 ligand types

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 5kd1(A).
_Zn		2. Metal: _ZN × 1 PDB code: 2jho(A).
		3. Ligand: SO4 × 18 Sulfate ion PDB codes: 1bz6(A), 1bzp(A), 1bzr(A), 3nml(A), 3ogb(A), 4pnj(A), 5ile(A), 5ilm(A), 5ilr(A), 5kkk(A), 5ut7(A), 5ut8(A), 5ut9(A), 5uta(A), 5ych(A), 6cf0(A).
		4. Ligand: PO4 × 8 Phosphate ion PDB codes: 1bvc(A), 1j3f(A), 1ufj(A), 1ufp(A), 1v9q(A), 2eb8(A), 2eb9(A), 2ef2(A).
_Cu		5. Metal: _CU × 1 PDB code: 4fwy(A).