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EBI
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Structure Databases
PDBsum
Ligand clusters for UniProt code P00777
Ligand clusters for P00777: Streptogrisin-B OS=Streptomyces griseus GN=sprB PE=1 SV=2
Top 6 (of 14) ligand clusters
Cluster 1.
6 ligand types
7 ligands
Cluster 2.
3 ligand types
5 ligands
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
3 ligand types
15 ligands
Cluster 5.
2 ligand types
2 ligands
Cluster 6.
1 ligand type
1 ligand
Representative protein: 1sgdE
Structures
PDB
Schematic diagram
1sgd
E
2sgp
E
1sgr
E
2sgf
E
3sgq
E
more ...
Cluster 1 contains 6 ligand types
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Ligand
Description
1. Ligand:
TYR × 1
l-tyrosine
PDB code:
2qaa
(A).
__K
2. Metal:
__K × 2
PDB codes:
2sgd
(E),
2sge
(E).
3. Ligand:
ASP-ALA-ILE-TYR × 1
PDB code:
2qa9
(E).
4. Ligand:
EDO × 1
1,2-Ethanediol
PDB code:
2qa9
(E).
5. Ligand:
GOL × 1
Glycerol
PDB code:
2qaa
(A).
6. Ligand:
LEU × 1
PDB code:
2qaa
(A).
Cluster 2 contains 3 ligand types
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Ligand
Description
1. Ligand:
SO4 × 3
Sulfate ion
PDB codes:
2qa9
(E),
2qaa
(A),
4sgb
(E).
2. Ligand:
EDO × 1
1,2-Ethanediol
PDB code:
2qaa
(A).
3. Ligand:
GOL × 1
Glycerol
PDB code:
2qa9
(E).
Cluster 3 contains 1 ligand type
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Ligand
Description
1. Ligand:
EPE × 1
4-(2-Hydroxyethyl)-1-Piperazine ethanesulfonic acid
PDB code:
2qaa
(A).
Cluster 4 contains 3 ligand types
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Ligand
Description
1. Ligand:
PO4 × 13
Phosphate ion
PDB codes:
1sgd
(E),
1sge
(E),
1sgn
(E),
1sgp
(E),
1sgq
(E),
1sgr
(E),
1sgy
(E),
2sgd
(E),
2sge
(E),
2sgf
(E),
2sgp
(E),
2sgq
(E),
3sgq
(E).
2. Ligand:
ACY × 1
Acetic acid
PDB code:
2qaa
(A).
_Cl
3. Metal:
_CL × 1
PDB code:
2qaa
(A).
Cluster 5 contains 2 ligand types
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Ligand
Description
1. Ligand:
SO4 × 1
Sulfate ion
PDB code:
2qaa
(A).
_Cl
2. Metal:
_CL × 1
PDB code:
2qa9
(E).
Cluster 6 contains 1 ligand type
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Ligand
Description
1. Ligand:
GOL × 1
Glycerol
PDB code:
2qaa
(A).