Ligand clusters for UniProt code P00651

Ligand clusters for P00651: Guanyl-specific ribonuclease T1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=rntA PE=1 SV=2

		6 ligand clusters Cluster 1. 14 ligand types 64 ligands Cluster 2. 1 ligand type 2 ligands Cluster 3. 4 ligand types 42 ligands Cluster 4. 1 ligand type 2 ligands Cluster 5. 1 ligand type 4 ligands Cluster 6. 1 ligand type 1 ligand
Representative protein: 1b2mA

Structures

PDB		Schematic diagram
1b2mA
1rhlA
2bu4A
1trqA
1g02A
		more ...

Cluster 1 contains 14 ligand types

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Ligand		Description
		1. Ligand: 2GP × 36 Guanosine-2'-Monophosphate PDB codes: 1bir(A), 1bu4(A), 1bvi(A), 1ch0(A), 1det(A), 1fys(A), 1fzu(A), 1g02(A), 1hyf(A), 1hz1(A), 1i0v(A), 1i0x(A), 1i2e(A), 1i2f(A), 1i2g(A), 1i3f(A), 1i3i(A), 1lra(A), 1rgl(A), 1rhl(A), 1rnt(A), 1trp(A), 1trq(A), 2aad(A), 2bir(A), 2bu4(A), 2hoh(A), 3bir(A), 3bu4(A), 3hoh(A), 3syu(A), 4bu4(A), 4hoh(A), 5bir(A), 5bu4(A), 5hoh(A).
		2. Ligand: 3GP × 7 Guanosine-3'-Monophosphate PDB codes: 1lov(A), 1low(A), 1loy(A), 1rgc(A), 1rls(A), 5gsp(A), 6gsp(A).
		3. Ligand: PO4 × 4 Phosphate ion PDB codes: 1rn4(A), 2aae(A), 3urp(A), 7gsp(A).
		4. Ligand: 2AM × 3 Adenosine-2'-Monophosphate PDB codes: 1rgk(A), 6rnt(A), 7rnt(A).
		5. Ligand: PGP × 2 Guanosine-3',5'-Diphosphate PDB codes: 3urp(A), 5rnt(A).
		6. Ligand: SGP × 2 Guanosine-2',3'-Cyclophosphorothioate PDB codes: 1gsp(A), 7gsp(A).
		7. Ligand: SGP-3GP × 2 SGP=Guanosine-2',3'-Cyclophosphorothioate, 3GP=Guanosine-3'-Monophosphate. PDB codes: 2gsp(A), 3gsp(A).
		8. Ligand: TRS × 2 2-Amino-2-Hydroxymethyl-Propane-1,3-Diol PDB codes: 1q9e(A), 1tto(A).
		9. Ligand: 3GP-SGP × 1 3GP=Guanosine-3'-Monophosphate, SGP=Guanosine-2',3'-Cyclophosphorothioate. PDB code: 4gsp(A).
		10. Ligand: GPG × 1 Guanylyl-2',5'-Phosphoguanosine PDB code: 2rnt(A).
		11. Ligand: SO4 × 1 Sulfate ion PDB code: 1rn1(A).
		12. Ligand: VO4 × 1 Vanadate ion PDB code: 3rnt(A).
_Ca		13. Metal: _CA × 1 PDB code: 3bir(A).
		14. Ligand: __G-U34 × 1 U34=Uridine 5'-Monomethylphosphate. PDB code: 1b2m(A).

Cluster 2 contains 1 ligand type

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Ligand		Description
		1. Ligand: __G-U34 × 2 U34=Uridine 5'-Monomethylphosphate. PDB codes: 1b2m(A),

Cluster 3 contains 4 ligand types

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Ligand		Description
_Zn		1. Metal: _ZN × 1 PDB code: 8rnt(A).
_Ca		2. Metal: _CA × 39 PDB codes: 1bir(A), 1bu4(A), 1fys(A), 1fzu(A), 1g02(A), 1gsp(A), 1i0v(A), 1i2e(A), 1i2f(A), 1i2g(A), 1i3f(A), 1i3i(A), 1lov(A), 1low(A), 1loy(A), 1rgc(A), 1rgk(A), 1rgl(A), 1rhl(A), 1rls(A), 1trp(A), 1trq(A), 2aae(A), 2bir(A), 2bu4(A), 2gsp(A), 2rnt(A), 3bir(A), 3gsp(A), 3rnt(A), 4bir(A), 4bu4(A), 4gsp(A), 5bu4(A), 5gsp(A), 6gsp(A), 6rnt(A), 7rnt(A), 9rnt(A).
_Mg		3. Metal: _MG × 1 PDB code: 1hz1(A).
_Sr		4. Metal: _SR × 1 PDB code: 1hyf(A).

Cluster 4 contains 1 ligand type

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Ligand		Description
_Na		1. Metal: _NA × 2 PDB codes: 1det(A), 3syu(A).

Cluster 5 contains 1 ligand type

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Ligand		Description
_Ca		1. Metal: _CA × 4 PDB codes: 1fys(A), 1fzu(A), 1i2f(A), 1i2g(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
_Na		1. Metal: _NA × 1 PDB code: 1lra(A).