Ligand clusters for UniProt code P00452

Ligand clusters for P00452: Ribonucleoside-diphosphate reductase 1 subunit alpha OS=Escherichia coli (strain K12) OX=83333 GN=nrdA PE=1 SV=2

		5 ligand clusters Cluster 1. 6 ligand types 7 ligands Cluster 2. 5 ligand types 10 ligands Cluster 3. 4 ligand types 9 ligands Cluster 4. 4 ligand types 9 ligands Cluster 5. 2 ligand types 17 ligands
Representative protein: 5r1rA

Structures

PDB		Schematic diagram
5r1rA
1r1rA
2r1rA
4r1rA
3r1rA
		more ...

Cluster 1 contains 6 ligand types

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Ligand		Description
		1. Ligand: GDP × 2 Guanosine-5'-Diphosphate PDB codes: 4r1r(A), 5cnv(A).
		2. Ligand: ADP × 1 Adenosine-5'-Diphosphate PDB code: 5cnu(A).
		3. Ligand: CDP × 1 Cytidine-5'-Diphosphate PDB code: 5cns(A).
		4. Ligand: DAT × 1 2'-Deoxyadenosine-5'-Diphosphate PDB code: 4erm(A).
		5. Ligand: SO4 × 1 Sulfate ion PDB code: 2x0x(A).
		6. Ligand: UDP × 1 Uridine-5'-Diphosphate PDB code: 5cnt(A).

Cluster 2 contains 5 ligand types

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Ligand		Description
		1. Ligand: ATP × 1 Adenosine-5'-Triphosphate PDB code: 3r1r(A).
		2. Ligand: DTP × 4 2'-Deoxyadenosine 5'-Triphosphate PDB codes: 3uus(A), 4erm(A), 5cnt(A),
		3. Ligand: DAT × 3 2'-Deoxyadenosine-5'-Diphosphate PDB codes: 5cns(A), 5cnu(A), 5cnv(A).
		4. Ligand: ATP × 1 Adenosine-5'-Triphosphate PDB code: 4erp(A).
		5. Ligand: TTP × 1 Thymidine-5'-Triphosphate PDB code: 5cnv(A).

Cluster 3 contains 4 ligand types

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Ligand		Description
		1. Ligand: TTP × 2 Thymidine-5'-Triphosphate PDB codes: 2r1r(A), 4r1r(A).
		2. Ligand: DTP × 4 2'-Deoxyadenosine 5'-Triphosphate PDB codes: 3uus(A), 4erm(A), 5cns(A), 5cnt(A).
		3. Ligand: TTP × 2 Thymidine-5'-Triphosphate PDB codes: 5cnv(A), 6w4x(A).
		4. Ligand: DGT × 1 2'-Deoxyguanosine-5'-Triphosphate PDB code: 5cnu(A).

Cluster 4 contains 4 ligand types

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Ligand		Description
		1. Ligand: TTP × 2 Thymidine-5'-Triphosphate PDB codes: 2r1r(A), 4r1r(A).
		2. Ligand: DTP × 4 2'-Deoxyadenosine 5'-Triphosphate PDB codes: 3uus(A), 4erm(A), 5cns(A), 5cnt(A).
		3. Ligand: TTP × 2 Thymidine-5'-Triphosphate PDB codes: 5cnv(A), 6w4x(A).
		4. Ligand: DGT × 1 2'-Deoxyguanosine-5'-Triphosphate PDB code: 5cnu(A).

Cluster 5 contains 2 ligand types

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Ligand		Description
		1. Ligand: TYR-LEU-VAL × 13 PDB codes: 1r1r(A), 2x0x(A), 2xak(A), 2xap(A), 2xav(A), 2xaw(A), 2xax(A), 2xay(A), 2xaz(A), 2xo4(A), 2xo5(A), 3r1r(A), 4r1r(A).
		2. Ligand: TYR-LEU-VAL-GLY × 4 PDB codes: 2r1r(A), 5r1r(A), 6r1r(A), 7r1r(A).