spacer
spacer

Ligand clusters for UniProt code P00433

Ligand clusters for P00433: Peroxidase C1A OS=Armoracia rusticana GN=PRXC1A PE=1 SV=2

6 ligand clusters
Cluster 1.
5 ligand types
40 ligands
Cluster 2.
1 ligand type
3 ligands
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
1 ligand type
15 ligands
Cluster 5.
1 ligand type
29 ligands
Cluster 6.
1 ligand type
29 ligands
Representative protein: 1gx2A  
JSmol
 

Structures

PDB   Schematic diagram
1gx2A    
1atjA    
4atjA    
1gwuA    
2atjA    
 more ...

 

 Cluster 1 contains 5 ligand types

Use checkboxes to select ligands to display in RasMol, Jmol, or download as an SDF file.
Selection shortcuts: select all/none invert selection.
Ligand Description


 
1. Ligand: ACT × 4
acetic acid
Acetate ion
PDB codes: 1gwo(A), 1gwu(A), 1h5a(A), 2ylj(A).


 
2. Ligand: FER × 3
3-(4-Hydroxy-3-Methoxyphenyl)-2-Propenoic acid
PDB codes: 1gw2(A), 6atj(A), 7atj(A).


 
3. Ligand: BHO × 4
Benzhydroxamic acid
PDB codes: 1gx2(A), 2atj(A), 3atj(A), 4atj(A).


 
4. Ligand: HEM × 28
Protoporphyrin IX containing fe
PDB codes: 1atj(A), 1gw2(A), 1gwo(A), 1gwt(A), 1gwu(A), 1gx2(A), 1h57(A), 1h58(A), 1h5a(A), 1h5c(A), 1h5d(A), 1h5e(A), 1h5f(A), 1h5g(A), 1h5h(A), 1h5i(A), 1h5j(A), 1h5k(A), 1h5l(A), 1h5m(A), 1kzm(A), 1w4w(A), 1w4y(A), 2atj(A), 3atj(A), 4atj(A), 6atj(A), 2ylj(A).


 
5. Ligand: CYN-HEM × 1
CYN=Cyanide ion, HEM=Protoporphyrin IX containing fe.
PDB code: 7atj(A).

 

 Cluster 2 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand Description


 
1. Ligand: FER × 3
3-(4-Hydroxy-3-Methoxyphenyl)-2-Propenoic acid
PDB codes: 1gw2(A), 1gwt(A), 7atj(A).

 

 Cluster 3 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand Description


 
1. Ligand: CAC × 1
Cacodylate ion
PDB code: 1kzm(A).

 

 Cluster 4 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand Description


 
1. Ligand: ACT × 15
acetic acid
Acetate ion
PDB codes: 1gwu(A), 1h57(A), 1h58(A), 1h5a(A), 1h5c(A), 1h5d(A), 1h5e(A), 1h5f(A), 1h5g(A), 1h5h(A), 1h5i(A), 1h5j(A), 1h5k(A), 1h5l(A), 1h5m(A).

 

 Cluster 5 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand Description

_Ca
 
1. Metal: _CA × 29
PDB codes: 1atj(A), 1gw2(A), 1gwo(A), 1gwt(A), 1gwu(A), 1gx2(A), 1h57(A), 1h58(A), 1h5a(A), 1h5c(A), 1h5d(A), 1h5e(A), 1h5f(A), 1h5g(A), 1h5h(A), 1h5i(A), 1h5j(A), 1h5k(A), 1h5l(A), 1h5m(A), 1kzm(A), 1w4w(A), 1w4y(A), 2atj(A), 2ylj(A), 3atj(A), 4atj(A), 6atj(A), 7atj(A).

 

 Cluster 6 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand Description

_Ca
 
1. Metal: _CA × 29
PDB codes: 1atj(A), 1gw2(A), 1gwo(A), 1gwt(A), 1gwu(A), 1gx2(A), 1h57(A), 1h58(A), 1h5a(A), 1h5c(A), 1h5d(A), 1h5e(A), 1h5f(A), 1h5g(A), 1h5h(A), 1h5i(A), 1h5j(A), 1h5k(A), 1h5l(A), 1h5m(A), 1kzm(A), 1w4w(A), 1w4y(A), 2atj(A), 2ylj(A), 3atj(A), 4atj(A), 6atj(A), 7atj(A).

 

spacer

spacer