Ligand clusters for UniProt code P00428

Ligand clusters for P00428: Cytochrome c oxidase subunit 5B, mitochondrial from Bos taurus

		Top 6 (of 14) ligand clusters Cluster 1. 2 ligand types 42 ligands Cluster 2. 2 ligand types 13 ligands Cluster 3. 1 ligand type 8 ligands Cluster 4. 1 ligand type 1 ligand Cluster 5. 1 ligand type 12 ligands Cluster 6. 1 ligand type 10 ligands
Representative protein: 1occF

Structures

PDB		Schematic diagram
1occF
2ybbQ
5wauF
6juwF
1ocoF
		more ...

Cluster 1 contains 2 ligand types

Use checkboxes to select ligands to display in RasMol, Jmol, or download as an SDF file. Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: PEK × 33 (1s)-2-{[(2-Aminoethoxy)(hydroxy)phosphoryl]oxy}-1- [(Stearoyloxy)methyl]ethyl (5e,8e,11e,14e)- Icosa-5,8, 11,14-Tetraenoate PDB codes: 1v54(F), 1v55(F), 2dyr(F), 2dys(F), 2eij(F), 2eik(F), 2eil(F), 2eim(F), 2ein(F), 3abk(F), 3ag1(F), 3ag2(F), 3ag3(F), 3ag4(F), 3asn(F), 3aso(F), 3wg7(F), 3x2q(F), 5b1a(F), 5b1b(F), 5b3s(F), 5x19(F), 5x1b(F), 5x1f(F), 5xdq(F), 5xdx(F), 5z84(F), 5z85(F), 5zco(F), 5zcp(F), 5zcq(F), 6j8m(F), 6nmf(F).
		2. Ligand: EDO × 9 1,2-Ethanediol PDB codes: 5b3s(F), 5x19(F), 5xdq(F), 5z84(F), 5z85(F), 5z86(F), 6juw(F).

Cluster 2 contains 2 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
_Zn		1. Metal: _ZN × 1 PDB code: 2ein(F).
		2. Ligand: EDO × 12 1,2-Ethanediol PDB codes: 5b3s(F), 5iy5(F), 5xdq(F), 5xdx(F), 5z84(F), 5z85(F), 5z86(F), 5zco(F), 5zcp(F), 5zcq(F), 6juw(F), 7coh(F).

Cluster 3 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: EDO × 8 1,2-Ethanediol PDB codes: 5b3s(F), 5x19(F), 5x1b(F), 5x1f(F), 5zco(F), 5zcp(F), 5zcq(F), 6juw(F).

Cluster 4 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: EDO × 1 1,2-Ethanediol PDB code: 5b3s(F).

Cluster 5 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: EDO × 12 1,2-Ethanediol PDB codes: 5b3s(F), 5x19(F), 5xdq(F), 5xdx(F), 5z84(F), 5z85(F), 5z86(F), 5zco(F), 5zcp(F), 5zcq(F), 6juw(F), 7coh(F).

Cluster 6 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: EDO × 10 1,2-Ethanediol PDB codes: 5xdq(F), 5xdx(F), 5z84(F), 5z85(F), 5z86(F), 5zco(F), 5zcp(F), 5zcq(F), 6juw(F), 7coh(F).