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Ligand clusters for UniProt code P00415

Ligand clusters for P00415: Cytochrome c oxidase subunit 3 from Bos taurus

Top 6 (of 13) ligand clusters
Cluster 1.
11 ligand types
325 ligands
 Cluster 2.
13 ligand types
270 ligands
 Cluster 3.
1 ligand type
19 ligands
 Cluster 4.
1 ligand type
8 ligands
 Cluster 5.
1 ligand type
14 ligands
 Cluster 6.
1 ligand type
7 ligands
Representative protein: 1v54C  
JSmol
 

Structures

PDB   Schematic diagram
1v54C    
3ag1C    
5x1fC    
5x19C    
5b3sC    
 more ...

 

 Cluster 1 contains 11 ligand types

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Ligand Description


 
1. Ligand: CHD × 110
cholic acid
Cholic acid
PDB codes: 1v54(C), 1v55(C), 2dyr(C), 2dys(C), 2eij(C), 2eik(C), 2eil(C), 2eim(C), 2ein(C), 2y69(C), 2zxw(C), 3abk(C), 3abl(C), 3abm(C), 3ag1(C), 3ag2(C), 3ag3(C), 3ag4(C), 3asn(C), 3aso(C), 3wg7(C), 3x2q(C), 5b1a(C), 5b1b(C), 5b3s(C), 5iy5(C), 5w97(C), 5wau(C), 5x19(C), 5x1b(C), 5x1f(C), 5xdq(C), 5xdx(C), 5z84(C), 5z85(C), 5z86(C), 5zco(C), 5zcp(C), 5zcq(C), 6j8m(C), 6juw(C), 6jy3(C), 6jy4(C), 6nkn(C), 6nmf(C), 6nmp(C), 7coh(C),


 
2. Ligand: PEK × 18
(1s)-2-{[(2-Aminoethoxy)(hydroxy)phosphoryl]oxy}-1- [(Stearoyloxy)methyl]ethyl (5e,8e,11e,14e)-
Icosa-5,8, 11,14-Tetraenoate
PDB codes: 1v54(C), 1v55(C), 2dyr(C), 2dys(C), 2eij(C), 2eik(C), 2eil(C), 2eim(C), 2ein(C),


 
3. Ligand: PGV × 13
(1r)-2-{[{[(2s)-2,3-Dihydroxypropyl]oxy}(hydroxy) phosphoryl]oxy}-1-
[(Palmitoyloxy)methyl]ethyl (11e)- Octadec-11-Enoate
PDB codes: 1v54(C), 1v55(C), 2dyr(C), 2dys(C), 2eij(C), 2eik(C), 2eil(C), 2eim(C), 2ein(C).


 
4. Ligand: CDL × 9
Cardiolipin
PDB codes: 1v54(C), 1v55(C), 2dyr(C), 2dys(C), 2eij(C), 2eik(C), 2eil(C), 2eim(C), 2ein(C).


 
5. Ligand: PEK × 66
(1s)-2-{[(2-Aminoethoxy)(hydroxy)phosphoryl]oxy}-1- [(Stearoyloxy)methyl]ethyl (5e,8e,11e,14e)-
Icosa-5,8, 11,14-Tetraenoate
PDB codes: 2zxw(C), 3abk(C), 3abl(C), 3abm(C), 3ag1(C), 3ag2(C), 3ag3(C), 3ag4(C), 3asn(C), 3aso(C), 3wg7(C), 3x2q(C), 5b1a(C), 5b1b(C), 5b3s(C), 5w97(C), 5wau(C), 5x19(C), 5x1b(C), 5x1f(C), 5xdq(C), 5xdx(C), 5z84(C), 5z85(C), 5z86(C), 5zco(C), 5zcp(C), 5zcq(C), 6j8m(C), 6juw(C), 6nkn(C), 6nmf(C), 6nmp(C),


 
6. Ligand: PGV × 43
(1r)-2-{[{[(2s)-2,3-Dihydroxypropyl]oxy}(hydroxy) phosphoryl]oxy}-1-
[(Palmitoyloxy)methyl]ethyl (11e)- Octadec-11-Enoate
PDB codes: 2zxw(C), 3abk(C), 3abl(C), 3abm(C), 3ag1(C), 3ag2(C), 3ag3(C), 3ag4(C), 3asn(C), 3aso(C), 3wg7(C), 3x2q(C), 5b1a(C), 5b1b(C), 5b3s(C), 5iy5(C), 5w97(C), 5wau(C), 5x19(C), 5x1b(C), 5x1f(C), 5xdq(C), 5xdx(C), 5z84(C), 5z85(C), 5z86(C), 5zco(C), 5zcp(C), 5zcq(C), 6j8m(C), 6juw(C), 6nkn(C), 6nmf(C), 6nmp(C).


 
7. Ligand: CDL × 34
Cardiolipin
PDB codes: 2zxw(C), 3abk(C), 3abl(C), 3abm(C), 3ag1(C), 3ag2(C), 3ag3(C), 3ag4(C), 3asn(C), 3aso(C), 3wg7(C), 3x2q(C), 5b1a(C), 5b1b(C), 5b3s(C), 5iy5(C), 5w97(C), 5wau(C), 5x19(C), 5x1b(C), 5x1f(C), 5xdq(C), 5xdx(C), 5z84(C), 5z85(C), 5z86(C), 5zco(C), 5zcp(C), 5zcq(C), 6j8m(C), 6juw(C), 6nkn(C), 6nmf(C), 6nmp(C).


 
8. Ligand: DMU × 12
Decyl-Beta-D-Maltopyranoside
PDB codes: 5z84(C), 5z85(C), 5z86(C), 5zco(C), 5zcp(C), 5zcq(C), 6juw(C), 7coh(C),


 
9. Ligand: EDO × 10
1,2-Ethanediol
PDB codes: 5x19(C), 5x1b(C), 5x1f(C), 6juw(C),


 
10. Ligand: LFA × 8
Eicosane
PDB codes: 7coh(C),


 
11. Ligand: UNL × 2
Unknown ligand
PDB codes: 5iy5(C),

 

 Cluster 2 contains 13 ligand types

Selection shortcuts: select all/none invert selection.
Ligand Description

_Zn
 
1. Metal: _ZN × 1
PDB code: 2ein(C).


 
2. Ligand: DMU × 7
Decyl-Beta-D-Maltopyranoside
PDB codes: 2dyr(C), 2dys(C), 2eij(C), 2eik(C), 2eil(C), 2eim(C), 2ein(C).


 
3. Ligand: PGV × 18
(1r)-2-{[{[(2s)-2,3-Dihydroxypropyl]oxy}(hydroxy) phosphoryl]oxy}-1-
[(Palmitoyloxy)methyl]ethyl (11e)- Octadec-11-Enoate
PDB codes: 1v54(C), 1v55(C), 2dyr(C), 2dys(C), 2eij(C), 2eik(C), 2eil(C), 2eim(C), 2ein(C),


 
4. Ligand: PEK × 9
(1s)-2-{[(2-Aminoethoxy)(hydroxy)phosphoryl]oxy}-1- [(Stearoyloxy)methyl]ethyl (5e,8e,11e,14e)-
Icosa-5,8, 11,14-Tetraenoate
PDB codes: 1v54(C), 1v55(C), 2dyr(C), 2dys(C), 2eij(C), 2eik(C), 2eil(C), 2eim(C), 2ein(C).


 
5. Ligand: CDL × 9
Cardiolipin
PDB codes: 1v54(C), 1v55(C), 2dyr(C), 2dys(C), 2eij(C), 2eik(C), 2eil(C), 2eim(C), 2ein(C).


 
6. Ligand: PGV × 76
(1r)-2-{[{[(2s)-2,3-Dihydroxypropyl]oxy}(hydroxy) phosphoryl]oxy}-1-
[(Palmitoyloxy)methyl]ethyl (11e)- Octadec-11-Enoate
PDB codes: 2y69(C), 2zxw(C), 3abk(C), 3abl(C), 3abm(C), 3ag1(C), 3ag2(C), 3ag3(C), 3ag4(C), 3asn(C), 3aso(C), 3wg7(C), 3x2q(C), 5b1a(C), 5b1b(C), 5b3s(C), 5iy5(C), 5w97(C), 5wau(C), 5x19(C), 5x1b(C), 5x1f(C), 5xdq(C), 5xdx(C), 5z84(C), 5z85(C), 5z86(C), 5zco(C), 5zcp(C), 5zcq(C), 6j8m(C), 6juw(C), 6jy3(C), 6jy4(C), 6nkn(C), 6nmf(C), 6nmp(C), 7coh(C),


 
7. Ligand: DMU × 40
Decyl-Beta-D-Maltopyranoside
PDB codes: 2zxw(C), 3abk(C), 3abl(C), 3abm(C), 3ag1(C), 3ag2(C), 3ag3(C), 3ag4(C), 3x2q(C), 5b1a(C), 5b1b(C), 5b3s(C), 5w97(C), 5wau(C), 5xdq(C), 5xdx(C), 5z84(C), 5z85(C), 5z86(C), 5zco(C), 5zcp(C), 5zcq(C), 6j8m(C), 6juw(C), 6nkn(C), 6nmf(C), 6nmp(C), 7coh(C),


 
8. Ligand: PEK × 38
(1s)-2-{[(2-Aminoethoxy)(hydroxy)phosphoryl]oxy}-1- [(Stearoyloxy)methyl]ethyl (5e,8e,11e,14e)-
Icosa-5,8, 11,14-Tetraenoate
PDB codes: 2y69(C), 2zxw(C), 3abk(C), 3abl(C), 3abm(C), 3ag1(C), 3ag2(C), 3ag3(C), 3ag4(C), 3asn(C), 3aso(C), 3wg7(C), 3x2q(C), 5b1a(C), 5b1b(C), 5b3s(C), 5iy5(C), 5w97(C), 5wau(C), 5x19(C), 5x1b(C), 5x1f(C), 5xdq(C), 5xdx(C), 5z84(C), 5z85(C), 5z86(C), 5zco(C), 5zcp(C), 5zcq(C), 6j8m(C), 6juw(C), 6jy3(C), 6jy4(C), 6nkn(C), 6nmf(C), 6nmp(C), 7coh(C).


 
9. Ligand: CDL × 37
Cardiolipin
PDB codes: 2zxw(C), 3abk(C), 3abl(C), 3abm(C), 3ag1(C), 3ag2(C), 3ag3(C), 3ag4(C), 3asn(C), 3aso(C), 3wg7(C), 3x2q(C), 5b1a(C), 5b1b(C), 5b3s(C), 5iy5(C), 5w97(C), 5wau(C), 5x19(C), 5x1b(C), 5x1f(C), 5xdq(C), 5xdx(C), 5z84(C), 5z85(C), 5z86(C), 5zco(C), 5zcp(C), 5zcq(C), 6j8m(C), 6juw(C), 6jy3(C), 6jy4(C), 6nkn(C), 6nmf(C), 6nmp(C), 7coh(C).


 
10. Ligand: EDO × 26
1,2-Ethanediol
PDB codes: 5b3s(C), 5iy5(C), 5xdq(C), 5xdx(C), 5z84(C), 5z85(C), 5z86(C), 5zco(C), 5zcp(C), 5zcq(C), 6juw(C), 7coh(C),


 
11. Ligand: CQX × 6
(2s,3s,4s,5s,6r)-2-(2-Decoxyethoxy)-6-(Hydroxymethyl) oxane-3,4,5-Triol
PDB codes: 6jy3(C), 6jy4(C),


 
12. Ligand: UNL × 2
Unknown ligand
PDB codes: 5iy5(C),


 
13. Ligand: DCW × 1
Dicyclohexylurea
PDB code: 2dys(C).

 

 Cluster 3 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand Description


 
1. Ligand: EDO × 19
1,2-Ethanediol
PDB codes: 5b3s(C), 5iy5(C), 5x19(C), 5xdq(C), 5xdx(C), 5z84(C), 5z85(C), 5z86(C), 5zco(C), 5zcp(C), 5zcq(C), 6juw(C), 7coh(C).

 

 Cluster 4 contains 1 ligand type

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Ligand Description


 
1. Ligand: EDO × 8
1,2-Ethanediol
PDB codes: 5b3s(C), 5x19(C), 5xdq(C), 5z84(C), 5z85(C), 5z86(C), 6juw(C), 7coh(C).

 

 Cluster 5 contains 1 ligand type

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Ligand Description


 
1. Ligand: EDO × 14
1,2-Ethanediol
PDB codes: 5b3s(C), 5iy5(C), 5x19(C), 5x1b(C), 5x1f(C), 5xdq(C), 5z84(C), 5z85(C), 5z86(C), 5zco(C), 5zcp(C), 5zcq(C), 6juw(C), 7coh(C).

 

 Cluster 6 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand Description


 
1. Ligand: EDO × 7
1,2-Ethanediol
PDB codes: 5x19(C), 5x1b(C), 5x1f(C), 5xdq(C), 5zco(C), 5zcp(C), 5zcq(C).

 

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