Ligand clusters for UniProt code P00396

Ligand clusters for P00396: Cytochrome c oxidase subunit 1 from Bos taurus

		Top 6 (of 35) ligand clusters Cluster 1. 16 ligand types 280 ligands Cluster 2. 10 ligand types 229 ligands Cluster 3. 2 ligand types 46 ligands Cluster 4. 5 ligand types 95 ligands Cluster 5. 3 ligand types 48 ligands Cluster 6. 3 ligand types 48 ligands
Representative protein: 1occA

Structures

PDB		Schematic diagram
1occA
2ybbL
6juwA
5xdqA
6j8mA
		more ...

Cluster 1 contains 16 ligand types

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Ligand		Description
		1. Ligand: CHD × 25 cholic acid Cholic acid PDB codes: 1v54(A), 1v55(A), 2dyr(A), 2dys(A), 2eij(A), 2eik(A), 2eil(A), 2ein(A), 2zxw(A), 3abk(A), 3abl(A), 3abm(A), 3ag3(A), 3wg7(A), 5b1a(A), 5b1b(A), 5b3s(A), 5iy5(A), 5xdq(A), 5xdx(A), 5zco(A), 5zcp(A), 5zcq(A), 6j8m(A), 6nmf(A).
		2. Ligand: HEA × 26 Heme-A PDB codes: 1occ(A), 1oco(A), 1ocr(A), 1ocz(A), 1v54(A), 1v55(A), 2dyr(A), 2dys(A), 2eij(A), 2eik(A), 2eil(A), 2eim(A), 2ein(A), 2occ(A).
		3. Ligand: TGL × 9 Tristearoylglycerol PDB codes: 1v54(A), 1v55(A), 2dyr(A), 2dys(A), 2eij(A), 2eik(A), 2eil(A), 2eim(A), 2ein(A).
		4. Ligand: PSC × 9 (7r,17e,20e)-4-Hydroxy-N,N,N-Trimethyl-9-Oxo-7- [(Palmitoyloxy)methyl]-3,5,8-Trioxa-4- Phosphahexacosa- 17,20-Dien-1-Aminium 4-Oxide PDB codes: 1v54(A), 1v55(A), 2dyr(A), 2dys(A), 2eij(A), 2eik(A), 2eil(A), 2eim(A), 2ein(A).
		5. Ligand: HEA × 74 Heme-A PDB codes: 2y69(A), 2ybb(L), 2zxw(A), 3abk(A), 3abl(A), 3abm(A), 3ag1(A), 3ag2(A), 3ag3(A), 3ag4(A), 3asn(A), 3aso(A), 3wg7(A), 3x2q(A), 5b1a(A), 5b1b(A), 5b3s(A), 5iy5(A), 5w97(A), 5wau(A), 5x19(A), 5x1b(A), 5x1f(A), 5xdq(A), 5xdx(A), 5z84(A), 5z85(A), 5z86(A), 5zco(A), 5zcp(A), 5zcq(A), 6j8m(A), 6juw(A), 6jy3(A), 6jy4(A), 6nkn(A), 6nmf(A), 6nmp(A), 7coh(A),
_Cu		6. Metal: _CU × 47 PDB codes: 1occ(A), 1oco(A), 1ocr(A), 1ocz(A), 1v54(A), 1v55(A), 2dyr(A), 2dys(A), 2eij(A), 2eik(A), 2eil(A), 2eim(A), 2ein(A), 2occ(A), 2y69(A), 2ybb(L), 2zxw(A), 3abk(A), 3abl(A), 3abm(A), 3ag1(A), 3ag2(A), 3ag3(A), 3ag4(A), 3asn(A), 3aso(A), 3wg7(A), 5iy5(A), 5w97(A), 5wau(A), 5x19(A), 5x1b(A), 5x1f(A), 5xdq(A), 5xdx(A), 5z84(A), 5z85(A), 5z86(A), 5zco(A), 5zcp(A), 5zcq(A), 6j8m(A), 6jy3(A), 6jy4(A), 6nkn(A), 6nmf(A), 6nmp(A).
		7. Ligand: TGL × 34 Tristearoylglycerol PDB codes: 2zxw(A), 3abk(A), 3abl(A), 3abm(A), 3ag1(A), 3ag2(A), 3ag3(A), 3ag4(A), 3asn(A), 3aso(A), 3wg7(A), 3x2q(A), 5b1a(A), 5b1b(A), 5b3s(A), 5iy5(A), 5w97(A), 5wau(A), 5x19(A), 5x1b(A), 5x1f(A), 5xdq(A), 5xdx(A), 5z84(A), 5z85(A), 5z86(A), 5zco(A), 5zcp(A), 5zcq(A), 6j8m(A), 6juw(A), 6nkn(A), 6nmf(A), 6nmp(A).
		8. Ligand: PSC × 33 (7r,17e,20e)-4-Hydroxy-N,N,N-Trimethyl-9-Oxo-7- [(Palmitoyloxy)methyl]-3,5,8-Trioxa-4- Phosphahexacosa- 17,20-Dien-1-Aminium 4-Oxide PDB codes: 2zxw(A), 3abk(A), 3abl(A), 3abm(A), 3ag1(A), 3ag2(A), 3ag3(A), 3ag4(A), 3asn(A), 3aso(A), 3wg7(A), 3x2q(A), 5b1a(A), 5b1b(A), 5b3s(A), 5iy5(A), 5w97(A), 5wau(A), 5x19(A), 5x1f(A), 5xdq(A), 5xdx(A), 5z84(A), 5z85(A), 5z86(A), 5zco(A), 5zcp(A), 5zcq(A), 6j8m(A), 6juw(A), 6nkn(A), 6nmf(A), 6nmp(A).
		9. Ligand: EDO × 7 1,2-Ethanediol PDB codes: 5b3s(A), 5x19(A), 5xdq(A), 5z84(A), 5z85(A), 5z86(A), 5zcq(A).
		10. Ligand: DMU × 5 Decyl-Beta-D-Maltopyranoside PDB codes: 5z84(A), 5zcq(A), 6juw(A), 7coh(A),
		11. Ligand: CDL × 3 Cardiolipin PDB codes: 6jy3(A), 6jy4(A), 7coh(A).
		12. Ligand: CQX × 2 (2s,3s,4s,5s,6r)-2-(2-Decoxyethoxy)-6-(Hydroxymethyl) oxane-3,4,5-Triol PDB codes: 6jy3(A), 6jy4(A).
		13. Ligand: HEA-CMO × 2 HEA=Heme-A, CMO=Carbon monoxide. PDB codes: 1oco(A), 3ag1(A).
		14. Ligand: HEA-PER × 2 HEA=Heme-A, PER=Peroxide ion. PDB codes: 2occ(A), 5iy5(A).
		15. Ligand: HEA-CYN × 1 HEA=Heme-A, CYN=Cyanide ion. PDB code: 3ag4(A).
		16. Ligand: HEA-_NO × 1 HEA=Heme-A, NO=Nitric oxide. PDB code: 3ag3(A).

Cluster 2 contains 10 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: CHD × 92 cholic acid Cholic acid PDB codes: 1v54(A), 1v55(A), 2dyr(A), 2dys(A), 2eij(A), 2eik(A), 2eil(A), 2eim(A), 2ein(A), 2y69(A), 2zxw(A), 3abk(A), 3abl(A), 3abm(A), 3ag1(A), 3ag2(A), 3ag3(A), 3ag4(A), 3asn(A), 3aso(A), 3wg7(A), 3x2q(A), 5b1a(A), 5b1b(A), 5b3s(A), 5iy5(A), 5w97(A), 5wau(A), 5x19(A), 5x1b(A), 5x1f(A), 5xdq(A), 5xdx(A), 5z84(A), 5z85(A), 5z86(A), 5zco(A), 5zcp(A), 5zcq(A), 6j8m(A), 6juw(A), 6jy3(A), 6jy4(A), 6nkn(A), 6nmf(A), 6nmp(A), 7coh(A),
		2. Ligand: PEK × 9 (1s)-2-{[(2-Aminoethoxy)(hydroxy)phosphoryl]oxy}-1- [(Stearoyloxy)methyl]ethyl (5e,8e,11e,14e)- Icosa-5,8, 11,14-Tetraenoate PDB codes: 1v54(A), 1v55(A), 2dyr(A), 2dys(A), 2eij(A), 2eik(A), 2eil(A), 2eim(A), 2ein(A).
		3. Ligand: PGV × 8 (1r)-2-{[{[(2s)-2,3-Dihydroxypropyl]oxy}(hydroxy) phosphoryl]oxy}-1- [(Palmitoyloxy)methyl]ethyl (11e)- Octadec-11-Enoate PDB codes: 1v54(A), 1v55(A), 2dyr(A), 2dys(A), 2eik(A), 2eil(A), 2eim(A), 2ein(A).
		4. Ligand: CDL × 43 Cardiolipin PDB codes: 1v54(A), 1v55(A), 2dyr(A), 2dys(A), 2eij(A), 2eik(A), 2eil(A), 2eim(A), 2ein(A), 2zxw(A), 3abk(A), 3abl(A), 3abm(A), 3ag1(A), 3ag2(A), 3ag3(A), 3ag4(A), 3asn(A), 3aso(A), 3wg7(A), 3x2q(A), 5b1a(A), 5b1b(A), 5b3s(A), 5iy5(A), 5w97(A), 5wau(A), 5x19(A), 5x1b(A), 5x1f(A), 5xdq(A), 5xdx(A), 5z84(A), 5z85(A), 5z86(A), 5zco(A), 5zcp(A), 5zcq(A), 6j8m(A), 6juw(A), 6nkn(A), 6nmf(A), 6nmp(A).
		5. Ligand: PEK × 32 (1s)-2-{[(2-Aminoethoxy)(hydroxy)phosphoryl]oxy}-1- [(Stearoyloxy)methyl]ethyl (5e,8e,11e,14e)- Icosa-5,8, 11,14-Tetraenoate PDB codes: 2zxw(A), 3abk(A), 3abl(A), 3abm(A), 3ag1(A), 3ag2(A), 3ag3(A), 3ag4(A), 3asn(A), 3aso(A), 3wg7(A), 3x2q(A), 5b1a(A), 5b1b(A), 5b3s(A), 5w97(A), 5wau(A), 5x19(A), 5x1b(A), 5x1f(A), 5xdq(A), 5xdx(A), 5z84(A), 5z85(A), 5z86(A), 5zco(A), 5zcp(A), 5zcq(A), 6j8m(A), 6juw(A), 6nmf(A), 6nmp(A).
		6. Ligand: PGV × 23 (1r)-2-{[{[(2s)-2,3-Dihydroxypropyl]oxy}(hydroxy) phosphoryl]oxy}-1- [(Palmitoyloxy)methyl]ethyl (11e)- Octadec-11-Enoate PDB codes: 2zxw(A), 3abl(A), 3abm(A), 3ag1(A), 3asn(A), 3aso(A), 3wg7(A), 5b1a(A), 5b1b(A), 5b3s(A), 5iy5(A), 5w97(A), 5wau(A), 5x1f(A), 5z84(A), 5z85(A), 5z86(A), 5zco(A), 5zcq(A), 6j8m(A), 6juw(A), 6nkn(A), 6nmp(A).
		7. Ligand: EDO × 15 1,2-Ethanediol PDB codes: 5b3s(A), 5x19(A), 5x1b(A), 5x1f(A), 5z84(A), 5z85(A), 5z86(A), 5zco(A), 5zcp(A), 6juw(A), 7coh(A).
		8. Ligand: LFA × 5 Eicosane PDB codes: 7coh(A),
		9. Ligand: DMU × 1 Decyl-Beta-D-Maltopyranoside PDB code: 7coh(A).
		10. Ligand: DMU-DMU-DMU × 1 DMU=Decyl-Beta-D-Maltopyranoside. PDB code: 7coh(A).

Cluster 3 contains 2 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: TGL × 43 Tristearoylglycerol PDB codes: 1v54(A), 1v55(A), 2dyr(A), 2dys(A), 2eij(A), 2eik(A), 2eil(A), 2eim(A), 2ein(A), 2zxw(A), 3abk(A), 3abl(A), 3abm(A), 3ag1(A), 3ag2(A), 3ag3(A), 3ag4(A), 3asn(A), 3aso(A), 3wg7(A), 3x2q(A), 5b1a(A), 5b1b(A), 5b3s(A), 5iy5(A), 5w97(A), 5wau(A), 5x19(A), 5x1b(A), 5x1f(A), 5xdq(A), 5xdx(A), 5z84(A), 5z85(A), 5z86(A), 5zco(A), 5zcp(A), 5zcq(A), 6j8m(A), 6juw(A), 6nkn(A), 6nmf(A), 6nmp(A).
		2. Ligand: CDL × 3 Cardiolipin PDB codes: 6jy3(A), 6jy4(A), 7coh(A).

Cluster 4 contains 5 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: PEK × 9 (1s)-2-{[(2-Aminoethoxy)(hydroxy)phosphoryl]oxy}-1- [(Stearoyloxy)methyl]ethyl (5e,8e,11e,14e)- Icosa-5,8, 11,14-Tetraenoate PDB codes: 1v54(A), 1v55(A), 2dyr(A), 2dys(A), 2eij(A), 2eik(A), 2eil(A), 2eim(A), 2ein(A).
		2. Ligand: PGV × 9 (1r)-2-{[{[(2s)-2,3-Dihydroxypropyl]oxy}(hydroxy) phosphoryl]oxy}-1- [(Palmitoyloxy)methyl]ethyl (11e)- Octadec-11-Enoate PDB codes: 1v54(A), 1v55(A), 2dyr(A), 2dys(A), 2eij(A), 2eik(A), 2eil(A), 2eim(A), 2ein(A).
		3. Ligand: PEK × 38 (1s)-2-{[(2-Aminoethoxy)(hydroxy)phosphoryl]oxy}-1- [(Stearoyloxy)methyl]ethyl (5e,8e,11e,14e)- Icosa-5,8, 11,14-Tetraenoate PDB codes: 2y69(A), 2zxw(A), 3abk(A), 3abl(A), 3abm(A), 3ag1(A), 3ag2(A), 3ag3(A), 3ag4(A), 3asn(A), 3aso(A), 3wg7(A), 3x2q(A), 5b1a(A), 5b1b(A), 5b3s(A), 5iy5(A), 5w97(A), 5wau(A), 5x19(A), 5x1b(A), 5x1f(A), 5xdq(A), 5xdx(A), 5z84(A), 5z85(A), 5z86(A), 5zco(A), 5zcp(A), 5zcq(A), 6j8m(A), 6juw(A), 6jy3(A), 6jy4(A), 6nkn(A), 6nmf(A), 6nmp(A), 7coh(A).
		4. Ligand: PGV × 38 (1r)-2-{[{[(2s)-2,3-Dihydroxypropyl]oxy}(hydroxy) phosphoryl]oxy}-1- [(Palmitoyloxy)methyl]ethyl (11e)- Octadec-11-Enoate PDB codes: 2y69(A), 2zxw(A), 3abk(A), 3abl(A), 3abm(A), 3ag1(A), 3ag2(A), 3ag3(A), 3ag4(A), 3asn(A), 3aso(A), 3wg7(A), 3x2q(A), 5b1a(A), 5b1b(A), 5b3s(A), 5iy5(A), 5w97(A), 5wau(A), 5x19(A), 5x1b(A), 5x1f(A), 5xdq(A), 5xdx(A), 5z84(A), 5z85(A), 5z86(A), 5zco(A), 5zcp(A), 5zcq(A), 6j8m(A), 6juw(A), 6jy3(A), 6jy4(A), 6nkn(A), 6nmf(A), 6nmp(A), 7coh(A).
		5. Ligand: DCW × 1 Dicyclohexylurea PDB code: 2dys(A).

Cluster 5 contains 3 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: PGV × 43 (1r)-2-{[{[(2s)-2,3-Dihydroxypropyl]oxy}(hydroxy) phosphoryl]oxy}-1- [(Palmitoyloxy)methyl]ethyl (11e)- Octadec-11-Enoate PDB codes: 1v54(A), 1v55(A), 2dyr(A), 2dys(A), 2eij(A), 2eik(A), 2eil(A), 2eim(A), 2ein(A), 2zxw(A), 3abk(A), 3abl(A), 3abm(A), 3ag1(A), 3ag2(A), 3ag3(A), 3ag4(A), 3asn(A), 3aso(A), 3wg7(A), 3x2q(A), 5b1a(A), 5b1b(A), 5b3s(A), 5iy5(A), 5w97(A), 5wau(A), 5x19(A), 5x1b(A), 5x1f(A), 5xdq(A), 5xdx(A), 5z84(A), 5z85(A), 5z86(A), 5zco(A), 5zcp(A), 5zcq(A), 6j8m(A), 6juw(A), 6nkn(A), 6nmf(A), 6nmp(A).
		2. Ligand: CQX × 4 (2s,3s,4s,5s,6r)-2-(2-Decoxyethoxy)-6-(Hydroxymethyl) oxane-3,4,5-Triol PDB codes: 6jy3(A), 6jy4(A),
		3. Ligand: DMU × 1 Decyl-Beta-D-Maltopyranoside PDB code: 7coh(A).

Cluster 6 contains 3 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: TGL × 43 Tristearoylglycerol PDB codes: 1v54(A), 1v55(A), 2dyr(A), 2dys(A), 2eij(A), 2eik(A), 2eil(A), 2eim(A), 2ein(A), 2zxw(A), 3abk(A), 3abl(A), 3abm(A), 3ag1(A), 3ag2(A), 3ag3(A), 3ag4(A), 3asn(A), 3aso(A), 3wg7(A), 3x2q(A), 5b1a(A), 5b1b(A), 5b3s(A), 5iy5(A), 5w97(A), 5wau(A), 5x19(A), 5x1b(A), 5x1f(A), 5xdq(A), 5xdx(A), 5z84(A), 5z85(A), 5z86(A), 5zco(A), 5zcp(A), 5zcq(A), 6j8m(A), 6juw(A), 6nkn(A), 6nmf(A), 6nmp(A).
		2. Ligand: DMU × 3 Decyl-Beta-D-Maltopyranoside PDB codes: 6juw(A), 7coh(A),
		3. Ligand: EDO × 2 1,2-Ethanediol PDB codes: 5b3s(A),