Ligand clusters for UniProt code P00157

Ligand clusters for P00157: Cytochrome b from Bos taurus

		Top 6 (of 13) ligand clusters Cluster 1. 26 ligand types 81 ligands Cluster 2. 13 ligand types 20 ligands Cluster 3. 4 ligand types 38 ligands Cluster 4. 2 ligand types 4 ligands Cluster 5. 2 ligand types 30 ligands Cluster 6. 1 ligand type 3 ligands
Representative protein: 1be3C

Structures

PDB		Schematic diagram
1be3C
6fo6C
6hawC
5klvC
1sqqC
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Cluster 1 contains 26 ligand types (of which only 20 are listed. Click for all)

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Ligand		Description
		1. Ligand: UQ2 × 4 Ubiquinone-2 PDB codes: 1ntz(C), 1sqq(C), 1sqv(C), 1sqx(C).
		2. Ligand: _UQ × 2 ubidecarenone Coenzyme q10, (2z,6e,10z,14e,18e,22e,26z)-Isomer PDB codes: 1pp9(C), 2a06(C).
		3. Ligand: GOL × 1 glycerin Glycerol PDB code: 2a06(C).
		4. Ligand: MC3 × 1 dl-dimyristoylphosphatidylcholine 1,2-Dimyristoyl-Rac-Glycero-3-Phosphocholine PDB code: 6nhg(C).
		5. Ligand: QNO × 1 2-Nonyl-4-Hydroxyquinoline n-Oxide PDB code: 1nu1(C).
		6. Ligand: HEM × 14 Protoporphyrin IX containing fe PDB codes: 1bgy(C), 1l0l(C), 1l0n(C), 1ntk(C), 1ntm(C), 1ntz(C), 1nu1(C), 1qcr(C), 1sqb(C), 1sqp(C), 1sqq(C), 1sqv(C), 1sqx(C), 2fyu(C).
		7. Ligand: AY1 × 1 [(2r,3s,6s,7r,8r)-3-[(3-Formamido-2-Oxidanyl-Phenyl) carbonylamino]-8-Hexyl-2,6-Dimethyl-4,9- Bis(oxidanylidene)-1,5-Dioxonan-7-Yl] 2- Methylpropanoate PDB code: 1ntk(C).
		8. Ligand: PEE × 6 1,2-Dioleoyl-Sn-Glycero-3-Phosphoethanolamine PDB codes: 1pp9(C), 1ppj(C), 1sqp(C), 2a06(C).
		9. Ligand: PLX × 1 (9r,11s)-9-({[(1s)-1-Hydroxyhexadecyl]oxy}methyl)-2,2- Dimethyl-5,7,10-Trioxa-2lambda~5~-Aza- 6lambda~5~- Phosphaoctacosane-6,6,11-Triol PDB code: 1sqp(C).
		10. Ligand: CDL × 1 Cardiolipin PDB code: 1sqp(C).
		11. Ligand: HEM × 14 Protoporphyrin IX containing fe PDB codes: 1be3(C), 1pp9(C), 1ppj(C), 2a06(C), 2ybb(C), 4d6t(C), 4d6u(C), 5klv(C), 5nmi(C), 5okd(C), 6fo6(C), 6haw(C), 6nhg(C), 6xvf(C).
		12. Ligand: PEE × 6 1,2-Dioleoyl-Sn-Glycero-3-Phosphoethanolamine PDB codes: 4d6t(C), 4d6u(C), 5nmi(C), 5okd(C), 6haw(C), 6xvf(C).
		13. Ligand: CDL × 6 Cardiolipin PDB codes: 5klv(C), 5nmi(C), 5okd(C), 6haw(C), 6nhg(C), 6xvf(C).
		14. Ligand: PO4 × 7 Phosphate ion PDB codes: 1ppj(C), 2a06(C), 4d6t(C), 4d6u(C),
		15. Ligand: 6PE × 5 1,2-Dihexanoyl-Sn-Glycero-3-Phosphoethanolamine PDB codes: 5klv(C), 5okd(C), 6haw(C), 6nhg(C), 6xvf(C).
		16. Ligand: 4X9 × 1 3-Chloro-2,6-Dimethyl-5-{4-[4-(Trifluoromethoxy) phenoxy]phenyl}pyridin-4-Ol PDB code: 4d6t(C).
		17. Ligand: 9XE × 1 7-Methoxy-3-Methyl-2-[5-[4-(Trifluoromethyloxy) phenyl]pyridin-3-Yl]-1~{h}-Quinolin-4-One PDB code: 5okd(C).
		18. Ligand: ANY × 1 2-Methyl-Butyric acid 3-(3-Formylamino-2-Hydroxy- Benzoylamino)-8-Heptyl-2,6-Dimethyl-4,9-Dioxo- [1, 5]dioxonan-7-Yl ester PDB code: 1ppj(C).
		19. Ligand: DY2 × 1 7-Methoxy-3-Methyl-2-[5-[4-(Trifluoromethyloxy) phenyl]pyridin-3-Yl]quinolin-4-Ol PDB code: 6fo6(C).
		20. Ligand: FX2 × 1 7-Methoxy-3-Methyl-2-[1-[[4-(Trifluoromethyloxy) phenyl]methyl]pyrazol-4-Yl]-3~{h}-Quinolin-4-One PDB code: 6haw(C).
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Cluster 2 contains 13 ligand types

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Ligand		Description
		1. Ligand: UQ2 × 1 Ubiquinone-2 PDB code: 1ntz(C).
		2. Ligand: SMA × 1 Stigmatellin a PDB code: 1sqx(C).
		3. Ligand: UHD × 1 6-Hydroxy-5-Undecyl-1,3-Benzothiazole-4,7-Dione PDB code: 1sqv(C).
		4. Ligand: OST × 1 Methyl (2z)-3-Methoxy-2-{2-[(E)-2- Phenylvinyl]phenyl}acrylate PDB code: 1sqq(C).
		5. Ligand: FMX × 1 Famoxadone PDB code: 1l0l(C).
		6. Ligand: FDN × 1 (5s)-3-Anilino-5-(2,4-Difluorophenyl)-5-Methyl-1,3- Oxazolidine-2,4-Dione PDB code: 2fyu(C).
		7. Ligand: AZO × 1 Methyl (2z)-2-(2-{[6-(2-Cyanophenoxy)pyrimidin-4- Yl]oxy}phenyl)-3-Methoxyacrylate PDB code: 1sqb(C).
		8. Ligand: MYX × 1 (2z,6e)-7-{2'-[(2e,4e)-1,6-Dimethylhepta-2,4-Dienyl]-2, 4'-Bi-1,3-Thiazol-4-Yl}-3,5-Dimethoxy-4- Methylhepta-2, 6-Dienamide PDB code: 1sqp(C).
		9. Ligand: SMA × 4 Stigmatellin a PDB codes: 1pp9(C), 1ppj(C), 2a06(C), 2ybb(C).
		10. Ligand: PG4 × 4 Tetraethylene glycol PDB codes: 5okd(C), 6xvf(C),
		11. Ligand: AZO × 1 Methyl (2z)-2-(2-{[6-(2-Cyanophenoxy)pyrimidin-4- Yl]oxy}phenyl)-3-Methoxyacrylate PDB code: 6nhg(C).
		12. Ligand: PGE × 2 Triethylene glycol PDB codes: 6haw(C),
		13. Ligand: FNM × 1 (5s)-5-Methyl-2-(Methylsulfanyl)-5-Phenyl-3- (Phenylamino)-3,5-Dihydro-4h-Imidazol-4-One PDB code: 5klv(C).

Cluster 3 contains 4 ligand types

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Ligand		Description
		1. Ligand: PEE × 4 1,2-Dioleoyl-Sn-Glycero-3-Phosphoethanolamine PDB codes: 1pp9(C), 1ppj(C), 1sqp(C), 2a06(C).
		2. Ligand: CDL × 26 Cardiolipin PDB codes: 1pp9(C), 1ppj(C), 1sqp(C), 2a06(C), 2ybb(C), 4d6t(C), 4d6u(C), 5klv(C), 5nmi(C), 5okd(C), 6haw(C), 6nhg(C), 6xvf(C),
		3. Ligand: PEE × 6 1,2-Dioleoyl-Sn-Glycero-3-Phosphoethanolamine PDB codes: 4d6t(C), 4d6u(C), 5nmi(C), 5okd(C), 6haw(C), 6xvf(C).
		4. Ligand: 8PE × 2 (2r)-3-{[(S)-(2-Aminoethoxy)(hydroxy)phosphoryl]oxy}-2- (Tetradecanoyloxy)propyl octadecanoate PDB codes: 5klv(C), 6nhg(C).

Cluster 4 contains 2 ligand types

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Ligand		Description
		1. Ligand: LMT × 3 Dodecyl-Beta-D-Maltoside PDB codes: 5okd(C), 6haw(C), 6xvf(C).
		2. Ligand: JZR × 1 Hexyl beta-D-Glucopyranoside PDB code: 1ppj(C).

Cluster 5 contains 2 ligand types

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Ligand		Description
		1. Ligand: GOL × 3 glycerin Glycerol PDB codes: 1pp9(C), 1ppj(C), 2a06(C).
		2. Ligand: HEM × 27 Protoporphyrin IX containing fe PDB codes: 1bgy(C), 1l0l(C), 1l0n(C), 1ntk(C), 1ntm(C), 1ntz(C), 1nu1(C), 1sqb(C), 1sqp(C), 1sqq(C), 1sqv(C), 1sqx(C), 2fyu(C), 1be3(C), 1pp9(C), 1ppj(C), 2a06(C), 2ybb(C), 4d6t(C), 4d6u(C), 5klv(C), 5nmi(C), 5okd(C), 6fo6(C), 6haw(C), 6nhg(C), 6xvf(C).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: JZR × 3 Hexyl beta-D-Glucopyranoside PDB codes: 1pp9(C), 1ppj(C), 2a06(C).