Ligand clusters for UniProt code P00125

Ligand clusters for P00125: Cytochrome c1, heme protein, mitochondrial from Bos taurus

		Top 6 (of 7) ligand clusters Cluster 1. 7 ligand types 22 ligands Cluster 2. 4 ligand types 30 ligands Cluster 3. 1 ligand type 13 ligands Cluster 4. 1 ligand type 1 ligand Cluster 5. 1 ligand type 3 ligands Cluster 6. 1 ligand type 1 ligand
Representative protein: 1bccD

Structures

PDB		Schematic diagram
1bccD
6hawD
1sqpD
6fo6D
5klvD
		more ...

Cluster 1 contains 7 ligand types

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Ligand		Description
		1. Ligand: BOG × 2 Octyl beta-D-Glucopyranoside PDB codes: 1bcc(D), 2bcc(D).
		2. Ligand: PEE × 6 1,2-Dioleoyl-Sn-Glycero-3-Phosphoethanolamine PDB codes: 1bcc(D), 1pp9(D), 1ppj(D), 1sqp(D), 2a06(D), 2bcc(D).
		3. Ligand: PLX × 1 (9r,11s)-9-({[(1s)-1-Hydroxyhexadecyl]oxy}methyl)-2,2- Dimethyl-5,7,10-Trioxa-2lambda~5~-Aza- 6lambda~5~- Phosphaoctacosane-6,6,11-Triol PDB code: 1sqp(D).
		4. Ligand: PEE × 7 1,2-Dioleoyl-Sn-Glycero-3-Phosphoethanolamine PDB codes: 4d6t(D), 4d6u(D), 5nmi(D), 5okd(D), 6haw(D), 6xvf(D).
		5. Ligand: 6PE × 3 1,2-Dihexanoyl-Sn-Glycero-3-Phosphoethanolamine PDB codes: 5okd(D), 6haw(D), 6xvf(D).
		6. Ligand: PX4 × 2 1,2-Dimyristoyl-Sn-Glycero-3-Phosphocholine PDB codes: 5okd(D), 6xvf(D).
		7. Ligand: PEF × 1 Di-Palmitoyl-3-Sn-Phosphatidylethanolamine PDB code: 5klv(D).

Cluster 2 contains 4 ligand types

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Ligand		Description
		1. Ligand: HEC × 1 Heme c PDB code: 1bgy(D).
		2. Ligand: HEM × 13 Protoporphyrin IX containing fe PDB codes: 1bcc(D), 1l0l(D), 1l0n(D), 1ntk(D), 1ntm(D), 1ntz(D), 1nu1(D), 1sqb(D), 1sqp(D), 1sqq(D), 1sqv(D), 1sqx(D), 2fyu(D).
		3. Ligand: HEC × 14 Heme c PDB codes: 1be3(D), 1pp9(D), 1ppj(D), 2a06(D), 2ybb(D), 4d6t(D), 4d6u(D), 5klv(D), 5nmi(D), 5okd(D), 6fo6(D), 6haw(D), 6nhg(D), 6xvf(D).
		4. Ligand: HEM × 2 Protoporphyrin IX containing fe PDB codes: 2bcc(D), 3bcc(D).

Cluster 3 contains 1 ligand type

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Ligand		Description
		1. Ligand: CDL × 13 Cardiolipin PDB codes: 1pp9(D), 1ppj(D), 1sqp(D), 2a06(D), 2ybb(D), 4d6t(D), 4d6u(D), 5klv(D), 5nmi(D), 5okd(D), 6haw(D), 6nhg(D), 6xvf(D).

Cluster 4 contains 1 ligand type

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Ligand		Description
		1. Ligand: PEE × 1 1,2-Dioleoyl-Sn-Glycero-3-Phosphoethanolamine PDB code: 1pp9(D).

Cluster 5 contains 1 ligand type

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Ligand		Description
		1. Ligand: JZR × 3 Hexyl beta-D-Glucopyranoside PDB codes: 1pp9(D), 1ppj(D), 2a06(D).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: JZR × 1 Hexyl beta-D-Glucopyranoside PDB code: 1ppj(D).