Ligand clusters for UniProt code P00044

Ligand clusters for P00044: Cytochrome c isoform 1 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

		Top 6 (of 10) ligand clusters Cluster 1. 28 ligand types 191 ligands Cluster 2. 3 ligand types 4 ligands Cluster 3. 4 ligand types 12 ligands Cluster 4. 2 ligand types 2 ligands Cluster 5. 1 ligand type 3 ligands Cluster 6. 1 ligand type 2 ligands
Representative protein: 1chhA

Structures

PDB		Schematic diagram
1chhA
1irvA
1crgA
1chiA
2yccA
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Cluster 1 contains 28 ligand types (of which only 20 are listed. Click for all)

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Ligand		Description
		1. Ligand: GOL × 3 glycerin Glycerol PDB codes: 4ye1(A), 6rsj(A),
		2. Ligand: ZNH × 1 Protoporphyrin IX containing zn PDB code: 2b11(B).
		3. Ligand: HEC × 1 Heme c PDB code: 2gb8(B).
		4. Ligand: HEM × 54 Protoporphyrin IX containing fe PDB codes: 1kyo(W), 1s6v(B), 1u74(B), 2b0z(B), 2b10(B), 2b12(B), 2bcn(B), 2pcc(B), 1chh(A), 1chi(A), 1chj(A), 1cie(A), 1cif(A), 1cig(A), 1cih(A), 1crg(A), 1crh(A), 1cri(A), 1crj(A), 1csu(A), 1csv(A), 1csw(A), 1csx(A), 1cty(A), 1ctz(A), 1irv(A), 1irw(A), 1rap(A), 1raq(A), 1ycc(A), 2ycc(A), 3cx5(W), 3tyi(A), 4mu8(A), 4n0k(A), 4p4q(B), 4q5p(A), 4qao(A), 4ye1(A), 5cib(B), 5cic(B), 5cid(B), 5cie(B), 5cif(B), 5cig(B), 5cih(B), 5kke(A), 5klu(A), 5t7h(A), 6p41(B), 6p42(B), 6p43(B).
		5. Ligand: SO4 × 43 Sulfate ion PDB codes: 1chh(A), 1chi(A), 1chj(A), 1cie(A), 1cif(A), 1cig(A), 1cih(A), 1crg(A), 1crh(A), 1cri(A), 1crj(A), 1csu(A), 1csv(A), 1csw(A), 1csx(A), 1cty(A), 1ctz(A), 1irv(A), 1irw(A), 1rap(A), 1raq(A), 1ycc(A), 2ycc(A), 4mu8(A), 5kke(A), 5klu(A), 5t7h(A), 6egy(A), 6egz(A), 6gd6(A), 6gd9(A), 6gda(A), 6rsk(A), 6suy(A),
		6. Ligand: HEC × 34 Heme c PDB codes: 1lms(A), 1yfc(A), 1yic(A), 2hv4(A), 2jqr(A), 2jti(B), 2lir(A), 2lit(A), 2mhm(A), 2n18(B), 2orl(A), 5kpf(A), 5lft(A), 5lyc(A), 5ncv(A), 5t8w(A), 6egy(A), 6egz(A), 6gd6(A), 6gd7(A), 6gd8(A), 6gd9(A), 6gda(A), 6rgi(A), 6rsi(A), 6rsj(A), 6rsk(A), 6rsl(A), 6s8y(A), 6suy(A), 6y0j(A).
		7. Ligand: EVB × 25 Sulfonato-Calix[8]arene PDB codes: 6gd6(A), 6gd7(A), 6gd8(A), 6gd9(A), 6gda(A), 6rsi(A), 6rsj(A), 6rsk(A), 6rsl(A), 6y0j(A).
		8. Ligand: B4T × 4 Mono-Pegylated sulfonatocalix[4]arene PDB codes: 6egy(A),
		9. Ligand: B4X × 3 Di-Pegylated sulfonatocalix[4]arene PDB codes: 6egz(A),
		10. Ligand: T3Y × 3 25,26,27,28-Tetrahydroxypentacyclo[19.3.1.1~3,7~.1~9, 13~.1~15,19~]octacosa- 1(25),3(28),4,6,9(27),10,12, 15(26),16,18,21,23-Dodecaene-5,11,17,23-Tetrasulfonic acid PDB codes: 3tyi(A), 4n0k(A), 4ye1(A).
		11. Ligand: 6VB × 2 Bromo-Trisulfonatocalix[4]arene PDB codes: 5lft(A),
		12. Ligand: EPE × 2 4-(2-Hydroxyethyl)-1-Piperazine ethanesulfonic acid PDB codes: 6gd9(A),
		13. Ligand: 6UZ × 1 Omega-Undecylenyl-Beta-D-Maltopyranoside PDB code: 5klu(A).
		14. Ligand: 7AZ × 1 Phosphonato-Calix[6]arene PDB code: 5lyc(A).
		15. Ligand: 8TE × 1 P-Methylphosphonatocalix[4]arene PDB code: 5ncv(A).
		16. Ligand: CM5 × 1 5-Cyclohexyl-1-Pentyl-Beta-D-Maltoside PDB code: 5kke(A).
		17. Ligand: CYN-HEM × 1 CYN=Cyanide ion, HEM=Protoporphyrin IX containing fe. PDB code: 1fhb(A).
		18. Ligand: FWQ × 1 P-Sulfonatocalix[6]arene PDB code: 6rgi(A).
		19. Ligand: GLC-FRU × 1 GLC=Alpha-D-Glucopyranose, FRU=Beta-D-Fructofuranose. PDB code: 3cx5(W).
		20. Ligand: IMD × 1 Imidazole PDB code: 6rgi(A).
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Cluster 2 contains 3 ligand types

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 6rsj(A).
		2. Ligand: SO4 × 2 Sulfate ion PDB codes: 5kke(A), 5t7h(A).
		3. Ligand: 8TE × 1 P-Methylphosphonatocalix[4]arene PDB code: 5ncv(A).

Cluster 3 contains 4 ligand types

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Ligand		Description
		1. Ligand: GOL × 3 glycerin Glycerol PDB codes: 5kke(A), 6gd7(A), 6rsj(A).
_Zn		2. Metal: _ZN × 1 PDB code: 6s8y(A).
		3. Ligand: SO4 × 7 Sulfate ion PDB codes: 4mu8(A), 5lyc(A), 6gd6(A), 6gda(A),
		4. Ligand: ACT × 1 Acetate ion PDB code: 6s8y(A).

Cluster 4 contains 2 ligand types

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Ligand		Description
		1. Ligand: 4NL × 1 4-Aminophenol PDB code: 2orl(A).
		2. Ligand: SO4 × 1 Sulfate ion PDB code: 6gd6(A).

Cluster 5 contains 1 ligand type

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Ligand		Description
		1. Ligand: SO4 × 3 Sulfate ion PDB codes: 4mu8(A), 6gd9(A), 6gda(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: SO4 × 2 Sulfate ion PDB codes: 5klu(A), 6gda(A).